Skip to content

Clarify consensus -@N speed expectations.#2141

Merged
daviesrob merged 1 commit into
samtools:developfrom
jkbonfield:consensus-threads
Nov 20, 2024
Merged

Clarify consensus -@N speed expectations.#2141
daviesrob merged 1 commit into
samtools:developfrom
jkbonfield:consensus-threads

Conversation

@jkbonfield

Copy link
Copy Markdown
Contributor

Like many commands, this is currently file format decoding only and the consensus command can be dominated by the main worker thread. The most extreme case of calling a simple consensus on an archive-mode CRAM still only gained a 2 fold speed up, so more than 1 decode thread isn't necessary.

Fix #2134

Like many commands, this is currently file format decoding only and
the consensus command can be dominated by the main worker thread.  The
most extreme case of calling a simple consensus on an archive-mode
CRAM still only gained a 2 fold speed up, so more than 1 decode thread
isn't necessary.

Fix samtools#2134
@daviesrob daviesrob merged commit 846f690 into samtools:develop Nov 20, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

samtools consensus threads

2 participants