View: add --save-counts option#2120
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Adds an option to store counts of records processed, accepted and rejected by filtering to a file. The data is saved as JSON, but pretty-printed so it also can be processed fairly easily as a simple text file. Fixes samtools#2038 (Using view command to filter the records from a bam file, but also report the number of reads passed the filter or dropped.)
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Adds an option to store counts of records processed, accepted and rejected by filtering to a file. The data is saved as JSON, but pretty-printed so it also can be processed fairly easily as a simple text file.
Fixes #2038 (Using view command to filter the records from a bam file, but also report the number of reads passed the filter or dropped.)