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Fix hard clip quality left hand side score.#2053

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daviesrob merged 1 commit into
samtools:developfrom
whitwham:ampliconclip_hc_quality
May 23, 2024
Merged

Fix hard clip quality left hand side score.#2053
daviesrob merged 1 commit into
samtools:developfrom
whitwham:ampliconclip_hc_quality

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When hard clipping the left hand side of an alignment the quality score was being trimmed from the right hand side. The will quality score will now be trimmed from the correct side. Fixes #2048.

When hard clipping the left hand side of an alignment the quality score was being trimmed from the right hand side.  The will quality score will now be trimmed from the correct side.  Fixes samtools#2048.
@daviesrob daviesrob self-assigned this May 23, 2024
@daviesrob daviesrob merged commit 59ac156 into samtools:develop May 23, 2024
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samtools ampliconclip takes quality scores from read start rather than specifed region

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