Trying to use plot-bamstats with samtools-1.20 but the command fails.
Command:
plot-bamstats -p mypref mytestfile.stats
Command error:
"mypref-read_length.gp", line 20: Can't plot with an empty x range!
The command exited with non-zero status 256:
gnuplot mypref-read_length.gp
at /usr/local/bin/plot-bamstats line 54.
main::error("The command exited with non-zero status 256:\x{a}\x{9}gnuplot mypref-"...) called at /usr/local/bin/plot-bamstats line 339
main::plot("mypref-read_length.gp") called at /usr/local/bin/plot-bamstats line 1335
main::plot_read_len_hist(HASH(0x55fb79728de8)) called at /usr/local/bin/plot-bamstats line 44
In the mypref-read_length.gp the xrange is [101: 101]. The input mytestfile.stats file has only one RL:
# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
RL 101 1959398
# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
FRL 101 979699
# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
LRL 101 979699
When running on a stats file with multiple values for RL, the plot-bamstats command finishes successfully.
Also, should the generated HTML report include all images (as currently it looks like it is missing the *-coverage.png and *-read_length.png)?
Trying to use plot-bamstats with samtools-1.20 but the command fails.
Command:
Command error:
In the mypref-read_length.gp the xrange is [101: 101]. The input mytestfile.stats file has only one RL:
When running on a stats file with multiple values for RL, the plot-bamstats command finishes successfully.
Also, should the generated HTML report include all images (as currently it looks like it is missing the *-coverage.png and *-read_length.png)?