samtools index seems to be alone in
- not having the
--threads alias in the help
- and defaulting to "no threads". i assume default=1 and/or this means additional threads?
Only this tool:
Usage: samtools index [-bc] [-m INT] <in.bam> [out.index]
Options:
-b Generate BAI-format index for BAM files [default]
-c Generate CSI-format index for BAM files
-m INT Set minimum interval size for CSI indices to 2^INT [14]
-@ INT Sets the number of threads [none]
Every other tool:
-@, --threads INT
Number of additional threads to use [0]
Version:
samtools 1.10
Using htslib 1.10.2
samtools indexseems to be alone in--threadsalias in the helpOnly this tool:
Every other tool:
Version: