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richardstoeckl/README.md

Hi there 👋

I am a PhD Student at the German Archaea Centre at the University of Regensburg. Here, I am mainly involved in sequencing and genome assembly, annotation, synteny, etc. analysis of prokaryotic organisms.

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  1. prokanota prokanota Public

    prokanota - Flexible pipeline for prokaryotic annotation

    Python

  2. rgbio rgbio Public

    Performant reading and writing of GenBank (.gb/.gbk/.gbff) files in R via an interface to the gb-io Rust crate

    R

  3. QCforSeqCode QCforSeqCode Public

    Snakemake Pipeline to check the requirements for a prokaryotic assembly to be included in the SeqCode initiative

    Python 3

  4. basecallNanopore basecallNanopore Public

    Snakemake Pipeline to automatically basecall Nanopore sequencing data with hybrid approach of simplex and duplex basecalling

    JavaScript 2