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Aggregate k-mer counts with --count-kmers in transform_anno#568

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adamant-pwn merged 6 commits intomasterfrom
aggregate-counts
Nov 21, 2025
Merged

Aggregate k-mer counts with --count-kmers in transform_anno#568
adamant-pwn merged 6 commits intomasterfrom
aggregate-counts

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With a new test to verify correct filtering and aggregation.

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@karasikov karasikov left a comment

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The code looks good, let's add some tests where we aggregate counts from multiple columns, and also edge cases

@akahles akahles changed the title Aggregate k-mer counts with --count-kmers in transorm_anno Aggregate k-mer counts with --count-kmers in transform_anno Nov 20, 2025
Co-authored-by: Mikhail Karasikov <karasikov@users.noreply.github.com>
@adamant-pwn adamant-pwn merged commit fef52b6 into master Nov 21, 2025
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@adamant-pwn adamant-pwn deleted the aggregate-counts branch November 21, 2025 19:15
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3 participants