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switch CI to ubuntu-20.04 LTS, include HTSlib as a submodule#445

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karasikov merged 50 commits intomasterfrom
ci_update
Apr 25, 2023
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switch CI to ubuntu-20.04 LTS, include HTSlib as a submodule#445
karasikov merged 50 commits intomasterfrom
ci_update

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@hmusta hmusta commented Apr 6, 2023

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@hmusta hmusta changed the title switch CI to ubuntu-20.04 switch CI to ubuntu-22.04 LTS, remove tests for g++-8 Apr 12, 2023
@hmusta hmusta changed the title switch CI to ubuntu-22.04 LTS, remove tests for g++-8 switch CI to ubuntu-20.04 LTS Apr 13, 2023
@hmusta hmusta changed the title switch CI to ubuntu-20.04 LTS switch CI to ubuntu-20.04 LTS, use stripped-down version of htslib for static builds Apr 13, 2023
@hmusta hmusta changed the title switch CI to ubuntu-22.04 LTS switch CI to ubuntu-20.04 LTS Apr 14, 2023
@hmusta hmusta requested a review from karasikov April 23, 2023 22:18
@hmusta hmusta changed the title switch CI to ubuntu-20.04 LTS switch CI to ubuntu-20.04 LTS, include HTSlib as a submodule Apr 24, 2023
Comment on lines +133 to +142
- name: run unit tests
if: matrix.build_static == 'OFF'
run: |
export LD_LIBRARY_PATH="/usr/local/lib/:$LD_LIBRARY_PATH"
cd metagraph/build && ./unit_tests

- name: run integration tests
run: |
export LD_LIBRARY_PATH="/usr/local/lib/:$LD_LIBRARY_PATH"
cd metagraph/build && make check
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why did you have to move these steps?

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@hmusta hmusta Apr 24, 2023

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It helps with debugging. If any of the tests segfault and I can't reproduce the issue locally, this allows me to download the binary and run that instead.

@karasikov karasikov merged commit 090afa8 into master Apr 25, 2023
@karasikov karasikov deleted the ci_update branch April 25, 2023 10:38
@karasikov karasikov mentioned this pull request Sep 30, 2025
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2 participants