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Rat Genome Database

7 followers
rgd.web@mcw.edu

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rgd-core-library rgd-core-library Public

Domain layer and shared components

Java
rgd-web-application rgd-web-application Public

Code used by the RGD web site and tools

JavaScript 2
rgd-web-services rgd-web-services Public

Swagger implementation

Java
rgd-annotation-files rgd-annotation-files Public

GO annotation files in GAF, GPAD and GPI format

Repositories

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Showing 10 of 153 repositories

ontology-load-pipeline Public
Load all ontologies used by RGD.

rat-genome-database/ontology-load-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Mar 9, 2026
rgd-web-application Public
Code used by the RGD web site and tools

rat-genome-database/rgd-web-application’s past year of commit activity

JavaScript 2 GPL-3.0 0 0 2 Updated Mar 9, 2026
variant-load-pipeline Public
Load rat strain data from VCF files into RGD database and precomputes data for use by Variant Visualizer tool

rat-genome-database/variant-load-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Mar 9, 2026
hrdp-variant-load-pipeline Public
Load the HRDP Variants into variant visualizer

rat-genome-database/hrdp-variant-load-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Mar 9, 2026
rgd-annotation-files Public
GO annotation files in GAF, GPAD and GPI format

rat-genome-database/rgd-annotation-files’s past year of commit activity

0 GPL-3.0 0 1 0 Updated Mar 7, 2026
XCO-Experimental-Condition-Ontology Public
Experimental Condition Ontology maintained by RGD

rat-genome-database/XCO-Experimental-Condition-Ontology’s past year of commit activity

2 2 0 1 Updated Mar 6, 2026
alliance-submission-pipeline Public
Generate and submit files for rat and human to the Alliance (https://www.alliancegenome.org/)

rat-genome-database/alliance-submission-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Mar 6, 2026
update-secondary-go-id-pipeline Public
For GO annotations, replace secondary GO IDs with primary GO IDs.

rat-genome-database/update-secondary-go-id-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Mar 5, 2026
Ontology-Term-Requests Public
Repository for requesting new terms and updates to the Clinical Measurement (CMO), Measurement Method (MMO), and Experimental Condition (XCO) ontologies.

rat-genome-database/Ontology-Term-Requests’s past year of commit activity

0 0 2 0 Updated Mar 5, 2026
ratgtex-pipeline Public
A pipeline to load external ratgtex external ids into rgd.

rat-genome-database/ratgtex-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Mar 4, 2026

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obo ontology owl semantic-web obofoundry

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