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@qbic-pipelines

QBiC (qbic-pipelines)

Bioinformatics analysis pipelines at QBiC

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  1. rnadeseq rnadeseq Public

    Differential gene expression analysis and pathway analysis of RNAseq data

    Nextflow 32 24

  2. cellranger cellranger Public

    Nextflow pipeline wrapper for executing Cell Ranger

    Nextflow 13 2

  3. vcftomaf vcftomaf Public

    Nextflow pipeline to convert VCF files into MAF files.

    Nextflow 10 5

  4. root-tissue-analysis root-tissue-analysis Public

    Pipeline for pH analysis of A. thaliana root tissue

    Jupyter Notebook 4 1

  5. t2pmhc t2pmhc Public

    t2pmhc: A Structure-Informed Graph Neural Network for Predicting TCR–pMHC Binding

    Python 4 1

  6. icgc-featurecounts icgc-featurecounts Public

    Forked from apeltzer/IGCG-featureCounts

    A Nextflow pipeline to run featureCounts on RNAseq BAM files on ICGC in AWS/AWS Batch

    Nextflow 3 3

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