Scipy issues with recent 0.25.0.dev0 changes #4140
Description
🐛 Bug
I noticed quite a few new errors in github.com/lesteve/scipy-tests-pyodide. This is on commit 2505d4d. On commit 4cc1410 (one day before) the tests passed.
To Reproduce
If that helps there is a Pyodide debug build here
Expected behavior
Tests pass
Additional context
See build log
--------------------------------------------------------------------------------
Unexpected test results
--------------------------------------------------------------------------------
scipy.fft.tests result expected in ['passed'], got 'fatal error or timeout' instead
scipy.optimize.tests result expected in ['failed'], got 'fatal error or timeout' instead
scipy.sparse.linalg._dsolve.tests result expected in ['passed'], got 'fatal error or timeout' instead
scipy.special.tests result expected in ['failed'], got 'fatal error or timeout' instead
scipy.stats.tests result expected in ['failed'], got 'fatal error or timeout' instead
Here are more details for each issue:
--------------------------------------------------------------------------------
scipy.fft.tests
--------------------------------------------------------------------------------
Pyodide has suffered a fatal error. Please report this to the Pyodide maintainers.
The cause of the fatal error was:
RuntimeError: Aborted(). Build with -sASSERTIONS for more info.
at abort (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:651:15)
at _abort (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:16907:7)
at pyodide.asm.wasm.fatal_error_exit (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3780]:0x2bbd9e)
at pyodide.asm.wasm.fatal_error (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3765]:0x2b0f72)
at pyodide.asm.wasm._Py_FatalErrorFunc (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3778]:0x2bbb3c)
at pyodide.asm.wasm._Py_FatalError_TstateNULL (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3178]:0x260191)
at pyodide.asm.wasm.PyThreadState_Get (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3825]:0x2c0728)
at pyodide.asm.wasm.tupledealloc (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[2360]:0x1f42b9)
at pyodide.asm.wasm._Py_Dealloc (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[2162]:0x1e9a0c)
at pyodide.asm.wasm._PyObject_MakeTpCall (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[1061]:0x1a3255) {
pyodide_fatal_error: true
}
RuntimeError: Aborted(). Build with -sASSERTIONS for more info.
at abort (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:651:15)
at _abort (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:16907:7)
at pyodide.asm.wasm.fatal_error_exit (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3780]:0x2bbd9e)
at pyodide.asm.wasm.fatal_error (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3765]:0x2b0f72)
at pyodide.asm.wasm._Py_FatalErrorFunc (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3778]:0x2bbb3c)
at pyodide.asm.wasm._Py_FatalError_TstateNULL (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3178]:0x260191)
at pyodide.asm.wasm.PyThreadState_Get (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[3825]:0x2c0728)
at pyodide.asm.wasm.tupledealloc (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[2360]:0x1f42b9)
at pyodide.asm.wasm._Py_Dealloc (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[2162]:0x1e9a0c)
at pyodide.asm.wasm._PyObject_MakeTpCall (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[1061]:0x1a3255) {
pyodide_fatal_error: true
}
--------------------------------------------------------------------------------
scipy.optimize.tests
--------------------------------------------------------------------------------
test_zeros.py::test_gh9551_raise_error_if_disp_true PASSED [ 98%]
test_zeros.py::test_gh3089_8394[brentq] scipy.optimize.tests exited with exit code 66
Reason unclear (no traceback)
--------------------------------------------------------------------------------
scipy.sparse.linalg._dsolve.tests
--------------------------------------------------------------------------------
RuntimeError: memory access out of bounds
at pyodide.asm.wasm.__get_exception_message (wasm://wasm/pyodide.asm.wasm-025c82ca:wasm-function[12649]:0x4d016e)
at Module.___get_exception_message (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:94609:48)
at /home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:8471:9
at withStackSave (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:8137:17)
at getExceptionMessageCommon (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:8468:7)
at Object.getExceptionMessage (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:8484:40)
at convertCppException (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5911:31)
at API.fatal_error (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5925:48)
at API.maybe_fatal_error (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5963:17)
at Module.callPyObjectKwargs (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:4552:17)
--------------------------------------------------------------------------------
scipy.special.tests
--------------------------------------------------------------------------------
Pyodide has suffered a fatal error. Please report this to the Pyodide maintainers.
The cause of the fatal error was:
CppException boost::wrapexcept<std::domain_error>: Error in function boost::math::erf_inv<double>(double, double): Argument outside range [-1, 1] in inverse erf function (got p=-10).
at convertCppException (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5912:18)
at API.fatal_error (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5925:48)
at API.maybe_fatal_error (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5963:17)
at Module.callPyObjectKwargs (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:4552:17)
at Module.callPyObject (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:4604:25)
at Qe.apply (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5673:22)
at Object.apply (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5548:22)
at main (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/scipy-pytest.js:56:24) {
ty: 'boost::wrapexcept<std::domain_error>',
pyodide_fatal_error: true
}
CppException boost::wrapexcept<std::domain_error>: Error in function boost::math::erf_inv<double>(double, double): Argument outside range [-1, 1] in inverse erf function (got p=-10).
at convertCppException (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5912:18)
at API.fatal_error (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5925:48)
at API.maybe_fatal_error (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5963:17)
at Module.callPyObjectKwargs (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:4552:17)
at Module.callPyObject (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:4604:25)
at Qe.apply (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5673:22)
at Object.apply (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/node_modules/pyodide/pyodide.asm.js:5548:22)
at main (/home/runner/work/scipy-tests-pyodide/scipy-tests-pyodide/scipy-pytest.js:56:24) {
ty: 'boost::wrapexcept<std::domain_error>',
pyodide_fatal_error: true
}
--------------------------------------------------------------------------------
scipy.stats.tests
--------------------------------------------------------------------------------
Reason unclear last lines
test_continuous_basic.py::test_methods_with_lists[studentized_range-args96-ppf] FAILED [ 32%]
test_continuous_basic.py::test_methods_with_lists[studentized_range-args96-isf] scipy.stats.tests exited with exit code 66