pnpm version: 0.31.0

Code to reproduce the issue:

git clone http://github.com/mapbox/mapbox-gl-js
cd mapbox-gl-js
pnpm install
ls node_modules/.bin

Expected behavior:

A list of bin stubs from dependencies/devDependencies.

Actual behavior:

ls: node_modules/.bin: No such file or directory

It works fine in other repos I tested, but for some reason fails for this one. On a CI server (Circle), it's even stranger — some stubs are created and some others (like eslint) are not.

Additional information:

• node -v prints: v6.5.0
• OS X El Capitan

cc @rstacruz