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base repository: picrust/picrust2
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base: v2.6.2
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head repository: picrust/picrust2
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compare: v2.6.3
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  • 3 commits
  • 12 files changed
  • 1 contributor

Commits on Oct 22, 2025

  1. Add issue templates

    R-Wright-1 authored Oct 22, 2025
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Commits on Oct 23, 2025

  1. Create stale_issues.yml

    R-Wright-1 authored Oct 23, 2025
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Commits on Nov 27, 2025

  1. Picrust2-v2.6.3 (#399)

    Some updates:
    - Added a check for empty trait tables: this was specifically an issue if users created custom trait tables and these were empty/summed to zero for one of the domains
    - PFAM names were updated: in the PICRUSt2-SC database these used the names given by Eggnog as annotations. These have now been mapped to PFAM ID's (where possible) so that they match the description map files. The add_descriptions script can now be used with the PFAM ID's again. Note that there were a few PFAM names from the Eggnog annotations that didn't have PFAM ID's; these have been left as they are but they have no additional descriptions. 
    - Script naming for the scripts that work with only a single domain, rather than the PICRUSt2-SC separate reference files for bacteria and archaea, has been updated. This reflects that these scripts aren't only for use with the oldIMG database, but can be for fungi, either/or of the bacteria/archaea files, another custom database, etc.
    R-Wright-1 authored Nov 27, 2025
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