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phys2bids hanging (or taking more than 2 days to parse 1 file?) #431

@dangom

Description

@dangom

Summary

First time running phys2bids. Even with the "-info" flag, the process runs forever.
Here's how I'm calling it:

phys2bids -in task-breathhold_acq-highres_physio.txt  -info -chtrig 5

And here is the only output I get, after which phys2bids hangs:

phys2bids -in task-breathhold_acq-highres_physio.txt  -info -chtrig 5
Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected.
INFO       Currently running phys2bids version 2.6.2
INFO       Input file is task-breathhold_acq-highres_physio.txt
INFO       File extension is .txt
WARNING    If both acq and txt files exist in the path, acq will be selected.
INFO       Reading the file /cluster/osc/data/pilot/experiment-datasets/pilot-04/physio/task-breathhold_acq-highres_physio.txt
INFO       phys2bids detected that your file is in Labchart format

Any ideas on what could be going wrong?

Additional detail

  • pip installed 2 days ago
  • python 3.9 on a CentOS machine

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