msgf2pin in 3.4 does not run correctly in conda package #251
Description
Hi! On 3.1, I succesfully pass a metafile to msgf2pin (and it outputs Found a meta file: metafile). But when I use 3.4 (from bioconda), this approach doesnt seem to work anymore:
# msgf2pin -e trypsin -o test3.4.pin -P "decoy_" metafile
Pin-converter version 3.04.0, Build Date Dec 10 2019 13:41:34
Copyright (c) 2013 Lukas Käll. All rights reserved.
Written by Lukas Käll (lukas.kall@scilifelab.se) in the
School of Biotechnology at KTH - Royal Institute of Technology, Stockholm.
Issued command:
msgf2pin -e trypsin -o test3.4.pin -P decoy_ metafile
on 62a135aee412
XML parser error at :0:0