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  1. aimseg aimseg Public

    A Fiji-Ilastik toolkit for the analysis of myelinated axons in electron microscopy data

    Groovy 5

  2. qupath-daily qupath-daily Public

    A collection of Groovy scripts I use in QuPath for daily analysis tasks

    Groovy

  3. trackmate-analysis trackmate-analysis Public

    A lightweight toolkit to parse and analyze TrackMate XML tracking data

    Python

  4. incucyte-fiji-tools incucyte-fiji-tools Public

    A set of Fiji scripts to generate image stacks from Incucyte live-cell imaging data and apply XY drift correction across time points

    Groovy