Search results

Load output from other segmentation tools

Status: Open.

#83 In pachterlab/SpatialFeatureExperiment;

· PietroD opened on Dec 2, 2025

Workflow to incorporate H&E image (post-Xenium) info SFE?

Status: Open.

#78 In pachterlab/SpatialFeatureExperiment;

· dpcook opened on Jul 30, 2025

Hack engineering CRS in WKT to use PROJ for affine transformations

Status: Open.

Feature

#76 In pachterlab/SpatialFeatureExperiment;

· lambdamoses opened on Jun 28, 2025

Find spatial neighborhood graph based on any geometric predicate

intermediate

Status: Open.

Feature

#75 In pachterlab/SpatialFeatureExperiment;

· lambdamoses opened on Jun 27, 2025

merge SFE objects

Status: Open.

#69 In pachterlab/SpatialFeatureExperiment;

· cathalgking opened on Jun 2, 2025

Convert units

enhancementNew feature or requestNew feature or request

intermediate

Status: Open.

#57 In pachterlab/SpatialFeatureExperiment;

· lambdamoses opened on Nov 14, 2024

Conversion of sfe Object to AnnData

Status: Open.

#56 In pachterlab/SpatialFeatureExperiment;

· aasingh2 opened on Nov 14, 2024

New implementation of affine transformations of SFE objects

advanced

enhancementNew feature or requestNew feature or request

Status: Open.

#54 In pachterlab/SpatialFeatureExperiment;

· lambdamoses opened on Oct 25, 2024

make readSpatialxe output from nf-core spatialxe

advanced

enhancementNew feature or requestNew feature or request

Status: Open.

#53 In pachterlab/SpatialFeatureExperiment;

· alikhuseynov opened on Oct 22, 2024

make readProseg from proseg segmentation output

enhancementNew feature or requestNew feature or request

intermediate

Status: Open.

#52 In pachterlab/SpatialFeatureExperiment;

· alikhuseynov opened on Oct 11, 2024

Optimize VisiumHD loading

intermediate

optimization

refactor

Status: Open.

#51 In pachterlab/SpatialFeatureExperiment;

· alikhuseynov opened on Oct 6, 2024

Capacity Error with readXenium() Function and Issues Combining Samples Using cbind()

Status: Open.

#48 In pachterlab/SpatialFeatureExperiment;

· aasingh2 opened on Aug 5, 2024