Data is organized as follows:
.
├── analysis
│ ├── dogmaseq-dig
│ │ ├── ATA-737K-arc-v1_rc.txt
│ │ ├── ATA-737K-arc-v1.txt
│ │ ├── atac
│ │ │ └── cellatlas_info.json
│ │ ├── atac_subsam
│ │ │ └── cellatlas_info.json
│ │ ├── protein
│ │ │ └── cellatlas_info.json
│ │ ├── protein_feature_barcodes.txt
│ │ ├── rna
│ │ │ └── cellatlas_info.json
│ │ ├── RNA-737K-arc-v1.txt
│ │ ├── rna_subsam
│ │ │ └── cellatlas_info.json
│ │ ├── spec_joint_subsam.yaml
│ │ ├── spec_joint.yaml
│ │ ├── tag
│ │ │ └── cellatlas_info.json
│ │ └── tag_0419_feature_barcodes.txt
│ └── notebooks
│ ├── make_data.ipynb
│ └── subsam.ipynb
└── LICENSEThe cellatlas command used to process the specific dataset is found in the cellatlas_info.json. The two notebooks load data processed with cellatlas to perform analysis.