feat: #181 create separate hidden and no-ignore cli flags#210
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Description
Creates separate flags for handling hidden files and ignored files
Closes #181
Motivation and Context
Reduces confusion around how to manage hidden/ignored files
How Has This Been Tested?
Types of changes
Features
--hiddennow only affects hidden files--no-ignoreflag now effects ignored filesBreaking changes
--hiddenbehaviour is differentChecklist: