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Pull requests: nf-core/modules

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176 Open 7,572 Closed
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Pull requests list

Migrate ampcombi2/complete module to topic channels
#10559 opened Mar 11, 2026 by max-laurent Loading…
17 tasks
1
Migrate art_illumina module to topic channels
#10557 opened Mar 11, 2026 by mantisps Loading…
17 tasks
1
Issue 10172
#10556 opened Mar 11, 2026 by antoniasaracco • Draft
1
feature/module versions update
#10554 opened Mar 11, 2026 by LorenzoCampanelli1102 Loading…
16 tasks
1
Update cellranger-count versions topic channel size/s
#10553 opened Mar 11, 2026 by alanmmobbs93 • Draft
17 tasks
1
Artic topics migration
#10551 opened Mar 11, 2026 by eugeniafontecha Loading…
3
topic migration for atlasgeneannotation module size/m
#10550 opened Mar 11, 2026 by lourdeslabrador Loading…
17 tasks
1
1
nf-core/mag local catpack subworkflow extraction size/l
#10549 opened Mar 11, 2026 by mberacochea • Draft
6 of 14 tasks
@mberacochea
Adds topic support to ampcombi module hackathon2026 size/s
#10548 opened Mar 11, 2026 by mribeirodantas Loading…
7 of 17 tasks
1
@mribeirodantas
Fix topic
#10547 opened Mar 11, 2026 by carolineclbcq-fr Loading…
17 tasks
1
Adopt topic channels in module ampcombi2/cluster size/s
#10546 opened Mar 11, 2026 by juanfmx2 Loading…
5 tasks done
1
Spaddintrons topics migration
#10545 opened Mar 11, 2026 by snpresa Loading…
1 of 17 tasks
1
Mesmer topic migration
#10544 opened Mar 11, 2026 by kbestak Loading…
7 of 17 tasks
@kbestak
Migrate atlas/recal to topic channels
#10542 opened Mar 11, 2026 by sofiromano Loading…
1
Migrate argnorm to topic channels size/m
#10481 opened Mar 11, 2026 by garciafranciscomartn Loading…
1
3
Update adapterremoval size/m
#10457 opened Mar 11, 2026 by angelphanth Loading…
4 of 17 tasks
1
1
Remove ext.context_type to conform to nf-core guidelines
#10442 opened Mar 11, 2026 by mahesh-panchal Loading…
1 of 17 tasks
Create sub-issues for plink module topic channel migrations
#10441 opened Mar 11, 2026 by Copilot AI • Draft
@martings
Migrate bam2fastx/bam2fastq module to topic channels
#10438 opened Mar 11, 2026 by gretherv Loading…
17 tasks
1
1
Update to topics agat/spfilterfeaturefromkilllist
#10436 opened Mar 11, 2026 by LouisLeNezet Loading…
17 tasks
1
@LouisLeNezet
Adopt topic channels in module adapterremovalfixprefix size/m
#10435 opened Mar 11, 2026 by juanfmx2 Loading…
5 tasks done
1
@vagkaratzas
5
update abricate summary topic output Ready for Review size/s
#10433 opened Mar 11, 2026 by alanmmobbs93 Loading…
17 tasks
1
@alanmmobbs93
Update/bamtools topic channels
#10432 opened Mar 11, 2026 by martings Loading…
17 tasks
3
@martings @delfiterradas
2
feat: updated module to use topic channels
#10429 opened Mar 11, 2026 by snpresa Loading…
1 of 17 tasks
1
1
feature/updated agat/pgff2tsv module
#10428 opened Mar 11, 2026 by LorenzoCampanelli1102 Loading…
16 tasks
1
3
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