Migrating to issue from PR comment
I think it'd be great to document what compressions are supported, although this is not entirely generalizable across pathogen repos in the way we're aiming for with the multiple_inputs so we have to be careful with how we write the comment. As I understand it, and assuming we use separate merge_sequences and merge_metadata rules, then the supported compressions are:
- Metadata
- Multiple sources: whatever
augur merge supports
- Single source: what's supported by the rules where
input_metadata is used (4 different rules for zika as it currently stands)
- Sequences
- Multiple sources: whatever
augur merge supports
- Single source: what's supported by the rules where
input_sequences is used (only one rule for zika as it currently stands)
Migrating to issue from PR comment