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Document input compression support #93

@j23414

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@j23414

Migrating to issue from PR comment

I think it'd be great to document what compressions are supported, although this is not entirely generalizable across pathogen repos in the way we're aiming for with the multiple_inputs so we have to be careful with how we write the comment. As I understand it, and assuming we use separate merge_sequences and merge_metadata rules, then the supported compressions are:

  • Metadata
    • Multiple sources: whatever augur merge supports
    • Single source: what's supported by the rules where input_metadata is used (4 different rules for zika as it currently stands)
  • Sequences
    • Multiple sources: whatever augur merge supports
    • Single source: what's supported by the rules where input_sequences is used (only one rule for zika as it currently stands)

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