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Add weighted sampling docs#223

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victorlin merged 5 commits intomasterfrom
victorlin/add-weighted-sampling-docs
Aug 22, 2024
Merged

Add weighted sampling docs#223
victorlin merged 5 commits intomasterfrom
victorlin/add-weighted-sampling-docs

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@victorlin victorlin commented Aug 16, 2024

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Description of proposed changes

Adding docs for nextstrain/augur#1318

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@victorlin victorlin self-assigned this Aug 16, 2024
@victorlin victorlin force-pushed the victorlin/add-weighted-sampling-docs branch from 872bddc to 2c06854 Compare August 19, 2024 19:38
@victorlin victorlin force-pushed the victorlin/update-subsampling-docs branch from 5962ddb to 65f8fe4 Compare August 19, 2024 21:54
@victorlin victorlin force-pushed the victorlin/add-weighted-sampling-docs branch from 2c06854 to 522fe9c Compare August 19, 2024 22:01
@victorlin victorlin force-pushed the victorlin/update-subsampling-docs branch from 65f8fe4 to b5cb803 Compare August 19, 2024 22:57
@victorlin victorlin force-pushed the victorlin/add-weighted-sampling-docs branch from 522fe9c to 17ca960 Compare August 19, 2024 22:57
@victorlin victorlin force-pushed the victorlin/update-subsampling-docs branch 3 times, most recently from 62e01e5 to 5779a70 Compare August 20, 2024 23:35
Base automatically changed from victorlin/update-subsampling-docs to master August 20, 2024 23:36
I plan to use actual values in subsequent examples. Region gets the
point across in a more politically neutral way.
@victorlin victorlin force-pushed the victorlin/add-weighted-sampling-docs branch from 17ca960 to 76ff695 Compare August 20, 2024 23:40
Probabilistic sampling is really a special case of uniform sampling, not
a separate sampling method. Make it a section under caveats.
This makes it easier to add a section on weighted sampling, which also
falls under grouped sampling and shares the same caveats as uniform
sampling.
Add a new section and adjust existing content accordingly.
Weighted sampling makes this scenario technically feasible, but
practically difficult to achieve in a single augur filter call. Explain
this trade-off in detail.
@victorlin victorlin force-pushed the victorlin/add-weighted-sampling-docs branch from f4443a5 to c6084f3 Compare August 21, 2024 22:02
@victorlin victorlin marked this pull request as ready for review August 21, 2024 22:05
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