TODOs - bump to Python 3.11 - upgrade to Snakemake v9.6.2 - add relevant plugins for remote file support (https://snakemake.github.io/snakemake-plugin-catalog/) List based on current [remote file support in ncov](https://github.com/nextstrain/ncov/blob/41cf6470d3140963ff3e02c29241f80ae8ed9c33/workflow/snakemake_rules/remote_files.smk) - snakemake-storage-plugin-http - snakemake-storage-plugin-s3 - snakemake-storage-plugin-gcs
TODOs
List based on current remote file support in ncov