runner.aws_batch: Download .snakemake/metadata/ too#374
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To test this out, install the CLI from the build for this PR: curl -fsSL --proto '=https' https://nextstrain.org/cli/installer/mac | bash -s pr-build/374then submit an AWS Batch build with |
joverlee521
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Worked as expected! 🎉
I ran the zika/ingest via AWS Batch
nextstrain build \
--image nextstrain/base:branch-trs-upload-snakemake-metadata \
--aws-batch \
ingest
Then generated the Snakemake report locally
nextstrain build ingest --report
And see the expected stats:
tsibley
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Snakemake stores state information per input/output here and uses it to determine if it needs to re-run rules or not. It seems akin to the file mtimes which we already take care to preserve on upload/download. Additionally, the metadata recorded is used in Snakemake's report generation and is generally useful for looking at workflow statistics. Continue to not upload all of .snakemake/ en masse because it can potentially contain files that interfere with local usage and/or are large and unnecessary. Resolves: <nextstrain/cli#373> Related-to: <nextstrain/cli#374>
Snakemake stores state information per input/output here and uses it to determine if it needs to re-run rules or not. It seems akin to the file mtimes which we already take care to preserve on upload/download. Additionally, the metadata recorded is used in Snakemake's report generation and is generally useful for looking at workflow statistics. Continue to not download all of .snakemake/ en masse because it can potentially contain files that interfere with local usage and/or are large and unnecessary. Resolves: <#373> Related-to: <nextstrain/docker-base#220>
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Snakemake stores state information per input/output here and uses it to determine if it needs to re-run rules or not. It seems akin to the file mtimes which we already take care to preserve on upload/download. Additionally, the metadata recorded is used in Snakemake's report generation and is generally useful for looking at workflow statistics.
Continue to not download all of .snakemake/ en masse because it can potentially contain files that interfere with local usage and/or are large and unnecessary.
Resolves: #373
Related-to: nextstrain/docker-base#220
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