Context
Sometimes one wants to use multiple independent clade systems, like clade, outbreak, lineage in monkeypox or whole genome clade and G gene clade in RSV
Right now, augur clades always outputs a node data json with a magic fixed key clade_membership.
It would be nice if one could optionally adjust this key name through a CLI argument to augur clades.
That would save a lot of sed commands that are necessary otherwise in multiple scripts.
Context
Sometimes one wants to use multiple independent clade systems, like clade, outbreak, lineage in monkeypox or whole genome clade and G gene clade in RSV
Right now, augur clades always outputs a node data json with a magic fixed key
clade_membership.It would be nice if one could optionally adjust this key name through a CLI argument to augur clades.
That would save a lot of
sedcommands that are necessary otherwise in multiple scripts.