@@ -15,7 +15,7 @@ Generate metadata file with 250 rows.
1515
1616Weight locations A: B as 2 : 1 . This is reflected in target_group_sizes. tsv below.
1717
18- $ cat > weights. tsv << ~~
18+ $ cat > weights-A2B1 . tsv << ~~
1919 > location weight
2020 > A 2
2121 > B 1
@@ -24,7 +24,7 @@ Weight locations A:B as 2:1. This is reflected in target_group_sizes.tsv below.
2424 $ $ {AUGUR} filter \
2525 > -- metadata metadata. tsv \
2626 > -- group-by location \
27- > -- group-by-weights weights. tsv \
27+ > -- group-by-weights weights-A2B1 . tsv \
2828 > -- subsample-max-sequences 100 \
2929 > -- subsample-seed 0 \
3030 > -- output-group-by-sizes target_group_sizes. tsv \
@@ -37,7 +37,7 @@ Weight locations A:B as 2:1. This is reflected in target_group_sizes.tsv below.
3737
3838Using 1 : 1 weights is similarly straightforward, with 50 sequences from each location.
3939
40- $ cat > weights. tsv << ~~
40+ $ cat > weights-A1B1 . tsv << ~~
4141 > location weight
4242 > A 1
4343 > B 1
@@ -46,7 +46,7 @@ Using 1:1 weights is similarly straightforward, with 50 sequences from each loca
4646 $ $ {AUGUR} filter \
4747 > -- metadata metadata. tsv \
4848 > -- group-by location \
49- > -- group-by-weights weights. tsv \
49+ > -- group-by-weights weights-A1B1 . tsv \
5050 > -- subsample-max-sequences 100 \
5151 > -- subsample-seed 0 \
5252 > -- output-group-by-sizes target_group_sizes. tsv \
@@ -65,7 +65,7 @@ available per location.
6565 $ $ {AUGUR} filter \
6666 > -- metadata metadata. tsv \
6767 > -- group-by year location \
68- > -- group-by-weights weights. tsv \
68+ > -- group-by-weights weights-A1B1 . tsv \
6969 > -- subsample-max-sequences 100 \
7070 > -- subsample-seed 0 \
7171 > -- output-group-by-sizes target_group_sizes. tsv \
@@ -90,7 +90,7 @@ requested 17, so the total number of sequences outputted is lower than requested
9090 $ $ {AUGUR} filter \
9191 > -- metadata metadata. tsv \
9292 > -- group-by year location \
93- > -- group-by-weights weights. tsv \
93+ > -- group-by-weights weights-A1B1 . tsv \
9494 > -- subsample-max-sequences 100 \
9595 > -- subsample-seed 0 \
9696 > -- output-group-by-sizes target_group_sizes. tsv \
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