Add -print-output option to print workflow outputs JSON#6875
Open
bentsherman wants to merge 1 commit intomasterfrom
Open
Add -print-output option to print workflow outputs JSON#6875bentsherman wants to merge 1 commit intomasterfrom
-print-output option to print workflow outputs JSON#6875bentsherman wants to merge 1 commit intomasterfrom
Conversation
Signed-off-by: Ben Sherman <bentshermann@gmail.com>
✅ Deploy Preview for nextflow-docs-staging ready!
To edit notification comments on pull requests, go to your Netlify project configuration. |
3 tasks
d9fa5cd to
d752bc2
Compare
Member
|
This could be useful in several scenarios. Could not make sense to print it by default in human readable manner and use an output format flag to switch to json, similarly to module run? |
Member
Author
|
Yes I would be happy to always print something for the output. The |
Member
Author
|
@jorgee if I add an |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Spun off from #6574
This PR adds an option
-print-outputto theruncommand which prints the workflow outputs as JSON on workflow completionIt has no effect when there is no output block
When combined with
-q, it is useful for printing a comprehensive pipeline output that can be passed to downstream operations