Add stageFileEnabled flag to control .command.stage file creation#6618
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pditommaso merged 2 commits intomasterfrom Nov 28, 2025
Merged
Add stageFileEnabled flag to control .command.stage file creation#6618pditommaso merged 2 commits intomasterfrom
pditommaso merged 2 commits intomasterfrom
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) Improvement of #6558 providing: 1. More declarative approach 2. Better control on enabling/disabling stage file capability 3. Fix Google Batch stage file method - Add stageFileEnabled field to TaskBean - Add isStageFileEnabled() to TaskRun delegating to executor - Add isStageFileEnabled() to Executor with NXF_WRAPPER_STAGE_FILE_ENABLED env var support, defaulting to true for AbstractGridExecutor - Enable stageFileEnabled for GoogleBatchExecutor - Add comprehensive tests Signed-off-by: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
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Signed-off-by: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
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Summary
Improvement of #6558 providing:
Changes
stageFileEnabledfield to TaskBeanisStageFileEnabled()to TaskRun delegating to executorisStageFileEnabled()to Executor withNXF_WRAPPER_STAGE_FILE_THRESHOLDenv var support, defaulting to true forAbstractGridExecutorstageFileEnabledfor GoogleBatchExecutorCloses #5888
Related #4279
Test plan
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