Fix invalid cache write when cacheable split operation fails#6588
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bentsherman merged 1 commit intomasterfrom Nov 20, 2025
Merged
Fix invalid cache write when cacheable split operation fails#6588bentsherman merged 1 commit intomasterfrom
bentsherman merged 1 commit intomasterfrom
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Signed-off-by: Ben Sherman <bentshermann@gmail.com>
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pditommaso
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Nov 20, 2025
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Close #6494
This PR fixes an issue with cacheable split operations such as splitFasta / splitFastq / splitText with
file: true. In this case the operation saves a cache file that can be used on subsequent runs to reuse the chunks.However, this cache file was always being written, even when the split operation fails (e.g. by exhausting the JVM heap), causing subsequent runs to have a false cache hit instead of re-computing the chunks.
This PR fixes the issue by moving the
markComplete()call so that it's only called after the split operation completes successfully.