Fix issues with rsync stage-out mode#6587
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bentsherman merged 1 commit intomasterfrom Nov 22, 2025
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christopher-hakkaart
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Docs look good 👍
Signed-off-by: Ben Sherman <bentshermann@gmail.com>
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Close #6214 #6447
This PR fixes the
nxf_fs_rsync()function in the.command.runtemplateThe problem was that
rsyncdoes not actually initialize the target directory prior to copying, whereas I think we assumed that it did. This led to multiple issues:sometimes rsync will copy the source file "as" the target rather than "into" the target (Using
storeDirwithprocess.stageOutMode = "rsync"creates an invalid cache dir #6214)rsync will fail if the target parent directory doesn't already exist (can't create parent directories when stageOutMode is rsync #6447)