Fix null reference error in workflow output#6374
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bentsherman merged 2 commits intomasterfrom Sep 3, 2025
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Signed-off-by: Ben Sherman <bentshermann@gmail.com>
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pditommaso
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Sep 3, 2025
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Close #6340
This PR fixes a bug where
normalizePath()inPublishOpwas not supplying the correct filename to the dynamic path closure.It was supplying the simple file name instead of the path relative to the task directory, which caused an error when the file included a nested directory.
The
output-dsl.nfe2e test has been updated to test this condition. Thesummarytask is modeled aftermultiqcwhich creates nested output files.