Search results

"Error: peptide [x] was assigned to [protein y] that is not the database"

Status: Open.

#558 In nesvilab/philosopher;

· a-indra opened on Feb 6, 2026

Spectral library generation using FragPipe 23.1: Process 'PhilosopherFilter' finished, exit code: 137

Status: Open.

#557 In nesvilab/philosopher;

· andrewyy677 opened on Jan 25, 2026

Missing libz so file

Status: Open.

#554 In nesvilab/philosopher;

· bernt-matthias opened on Dec 17, 2025

Philosopher filter: time="11:59:11" level=error msg="Cannot read file. Error parsing the file "

Status: Open.

#552 In nesvilab/philosopher;

· rjvortega opened on Dec 10, 2025

Cannot read file. Error parsing, exit code: 1

Status: Open.

#547 In nesvilab/philosopher;

· winnieWei123456 opened on Oct 27, 2025

Where is the output database?

Status: Open.

#545 In nesvilab/philosopher;

· thh32 opened on Oct 13, 2025

PhilosopherFilter error

Status: Open.

#544 In nesvilab/philosopher;

· jongminchoi opened on Oct 10, 2025

variation in open-search results

Status: Open.

#542 In nesvilab/philosopher;

· animesh opened on Sep 2, 2025

The execution of the Philosopher was unexpectedly stuck.

Status: Open.

#541 In nesvilab/philosopher;

· huangcx1539 opened on Aug 30, 2025

Error on 'Assigning protein identifications to layers' with group FDR

Status: Open.

#540 In nesvilab/philosopher;

· alessandro-vai opened on Aug 21, 2025

Philosopher Protein ID and Gene in combined_proteins.tsv shows the full protein header

Status: Open.

#539 In nesvilab/philosopher;

· marlenejarap opened on Aug 5, 2025

Error when running a non-standard database (antibodies)

Status: Open.

#538 In nesvilab/philosopher;

· yishai99 opened on Jul 29, 2025