GitHub · Where software is built

Labels Milestones New issue

split bootstrap enrichment plots that are warped

#101

· rbutleriii opened

on Oct 3, 2025

level2 annotations error on `generate_bootstrap_plots`

#98

· rbutleriii opened

on May 28, 2025

Gene-Scoring Table for Cell Type Enrichment

#96

· pmayog opened

on Feb 12, 2025

Bootstrap Enrichment Test For Enrichment And Depletion

#95

· KevinMarinus opened

on Oct 30, 2024

generate_celltype_data struggling with a large matrix: "too many elements (>= 2^31) selected along dimension 1 of array"

#91

· ainefairbrother opened

on Nov 29, 2023

bootstrap_enrichment_test throws "Error in exp_mats[[cc]][s, ] <- sort(expD[, cc]) : replacement has length zero"

#86

· Kfarls opened

on Sep 28, 2023

Consider removing <4 gene limit

good first issue

#79

· bschilder opened

on Apr 3, 2023

Enrichment test in version 1.7.1

#78

· forrestzhaosen opened

on Mar 11, 2023

Choose what we're going to take as the 'true positive' results

#60

· NathanSkene opened

on Mar 10, 2022

·

Publish benchmarking paper for EWCE

How do the various methods of filtering low-expressed genes now implemented affect the results?

#59

· NathanSkene opened

on Mar 10, 2022

·

Publish benchmarking paper for EWCE

How much does parallelisation increase speed?

#58

· NathanSkene opened

on Mar 10, 2022

·

Publish benchmarking paper for EWCE

How does 1:1 ortholog definition affect results?

#57

· NathanSkene opened

on Mar 10, 2022

·

Publish benchmarking paper for EWCE