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MAINT: fix circle#9664

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drammock wants to merge 5 commits intomne-tools:mainfrom
drammock:fix-circle
Closed

MAINT: fix circle#9664
drammock wants to merge 5 commits intomne-tools:mainfrom
drammock:fix-circle

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@drammock drammock commented Aug 16, 2021 •
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  • workaround upstream bugs in nilearn & quantities
  • when setting up circle, don't install mayavi & pysurfer only to uninstall them 2 lines later
  • avoid building matplotlib from source when setting up circle
  • use apt instead of apt-get (seems to fix problems due to recent debian-buster version bump, not sure why)

@drammock drammock requested a review from agramfort August 16, 2021 15:16
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drammock commented Aug 16, 2021 •
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in attempting to fix circle, now we have pip-dependency-resolver hell:

Details 
Working around PyQt5 bugs
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E: Repository 'http://security.debian.org/debian-security buster/updates InRelease' changed its 'Suite' value from 'stable' to 'oldstable'
N: This must be accepted explicitly before updates for this repository can be applied. See apt-secure(8) manpage for details.
Do you want to accept these changes and continue updating from this repository? [y/N] Y
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N: Repository 'http://deb.debian.org/debian buster InRelease' changed its 'Version' value from '10.5' to '10.10'
E: Repository 'http://deb.debian.org/debian buster InRelease' changed its 'Suite' value from 'stable' to 'oldstable'
N: This must be accepted explicitly before updates for this repository can be applied. See apt-secure(8) manpage for details.
Do you want to accept these changes and continue updating from this repository? [y/N] Y
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E: Repository 'http://deb.debian.org/debian buster-updates InRelease' changed its 'Suite' value from 'stable-updates' to 'oldstable-updates'
N: This must be accepted explicitly before updates for this repository can be applied. See apt-secure(8) manpage for details.
Do you want to accept these changes and continue updating from this repository? [y/N] Y
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104 packages can be upgraded. Run 'apt list --upgradable' to see them.
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libglx0 is already the newest version (1.1.0-1).
libglx0 set to manually installed.
libglx-mesa0 is already the newest version (18.3.6-2+deb10u1).
libglx-mesa0 set to manually installed.
The following additional packages will be installed:
  dbus fonts-liberation libapparmor1 libcdt5 libcgraph6 libgd3 libgts-0.7-5
  libgts-bin libgvc6 libgvpr2 liblab-gamut1 libpathplan4 libxcb-util0
  libxcb-xkb1 libxdot4 libxkbcommon0
Suggested packages:
  default-dbus-session-bus | dbus-session-bus gsfonts graphviz-doc libgd-tools
The following NEW packages will be installed:
  dbus fonts-liberation graphviz libapparmor1 libcdt5 libcgraph6 libdbus-1-3
  libgd3 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 liblab-gamut1 libopengl0
  libosmesa6 libpathplan4 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
  libxcb-randr0 libxcb-render-util0 libxcb-shape0 libxcb-util0 libxcb-xfixes0
  libxcb-xinerama0 libxcb-xkb1 libxdot4 libxkbcommon-x11-0 libxkbcommon0
  optipng
0 upgraded, 30 newly installed, 0 to remove and 104 not upgraded.
Need to get 6826 kB of archives.
After this operation, 22.4 MB of additional disk space will be used.
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Installing setuptools and sphinx
/usr/local/lib/python3.8/site-packages/secretstorage/dhcrypto.py:16: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
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/usr/local/lib/python3.8/site-packages/secretstorage/util.py:25: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
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/usr/local/lib/python3.8/site-packages/secretstorage/dhcrypto.py:16: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
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Installing doc build dependencies
/usr/local/lib/python3.8/site-packages/secretstorage/dhcrypto.py:16: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
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Uninstalling pydata-sphinx-theme-0.6.3:
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/usr/local/lib/python3.8/site-packages/secretstorage/dhcrypto.py:16: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
/usr/local/lib/python3.8/site-packages/secretstorage/util.py:25: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
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Requirement already satisfied: pkginfo>=1.4.2 in /usr/local/lib/python3.8/site-packages (from twine->-r requirements_testing.txt (line 12)) (1.5.0.1)
Requirement already satisfied: sphinxcontrib-jsmath in /home/circleci/.local/lib/python3.8/site-packages (from sphinx!=4.1.0->-r requirements_doc.txt (line 2)) (1.0.1)
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Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /home/circleci/.local/lib/python3.8/site-packages (from sphinx!=4.1.0->-r requirements_doc.txt (line 2)) (2.0.0)
Requirement already satisfied: sphinxcontrib-qthelp in /home/circleci/.local/lib/python3.8/site-packages (from sphinx!=4.1.0->-r requirements_doc.txt (line 2)) (1.0.3)
Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /home/circleci/.local/lib/python3.8/site-packages (from sphinx!=4.1.0->-r requirements_doc.txt (line 2)) (1.1.5)
Requirement already satisfied: Pygments>=2.0 in /home/circleci/.local/lib/python3.8/site-packages (from sphinx!=4.1.0->-r requirements_doc.txt (line 2)) (2.9.0)
Requirement already satisfied: docutils<0.18,>=0.14 in /home/circleci/.local/lib/python3.8/site-packages (from sphinx!=4.1.0->-r requirements_doc.txt (line 2)) (0.16)
Requirement already satisfied: babel>=1.3 in /home/circleci/.local/lib/python3.8/site-packages (from sphinx!=4.1.0->-r requirements_doc.txt (line 2)) (2.9.1)
Requirement already satisfied: alabaster<0.8,>=0.7 in /home/circleci/.local/lib/python3.8/site-packages (from sphinx!=4.1.0->-r requirements_doc.txt (line 2)) (0.7.12)
Requirement already satisfied: sphinxcontrib-devhelp in /home/circleci/.local/lib/python3.8/site-packages (from sphinx!=4.1.0->-r requirements_doc.txt (line 2)) (1.0.2)
Requirement already satisfied: beautifulsoup4 in /home/circleci/.local/lib/python3.8/site-packages (from pydata-sphinx-theme>=0.6.3->-r requirements_doc.txt (line 4)) (4.9.3)
Requirement already satisfied: pybtex-docutils>=1.0.0 in /home/circleci/.local/lib/python3.8/site-packages (from sphinxcontrib-bibtex>=2.1.2->-r requirements_doc.txt (line 6)) (1.0.1)
Requirement already satisfied: pybtex>=0.20 in /home/circleci/.local/lib/python3.8/site-packages (from sphinxcontrib-bibtex>=2.1.2->-r requirements_doc.txt (line 6)) (0.24.0)
Collecting neo
  Using cached neo-0.10.0-py3-none-any.whl
  Downloading neo-0.9.0.tar.gz (2.1 MB)
  Downloading neo-0.8.0.tar.gz (2.1 MB)
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  Downloading neo-0.2.0.tar.gz (1.3 MB)
INFO: pip is looking at multiple versions of quantities to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of memory-profiler to determine which version is compatible with other requirements. This could take a while.
Collecting memory_profiler
  Using cached memory_profiler-0.58.0-py3-none-any.whl
  Downloading memory_profiler-0.57.0.tar.gz (34 kB)
  Downloading memory_profiler-0.55.0.tar.gz (40 kB)
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  Downloading memory_profiler-0.50.0.tar.gz (34 kB)
INFO: pip is looking at multiple versions of quantities to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of memory-profiler to determine which version is compatible with other requirements. This could take a while.
  Downloading memory_profiler-0.49.0.tar.gz (34 kB)
  Downloading memory_profiler-0.48.0.tar.gz (34 kB)
  Downloading memory_profiler-0.47.tar.gz (33 kB)
  Downloading memory_profiler-0.46.tar.gz (33 kB)
  Downloading memory_profiler-0.45.tar.gz (33 kB)
INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. If you want to abort this run, you can press Ctrl + C to do so. To improve how pip performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking
INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. If you want to abort this run, you can press Ctrl + C to do so. To improve how pip performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking
  Downloading memory_profiler-0.44.tar.gz (33 kB)
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  Downloading memory_profiler-0.16.tar.gz (9.7 kB)
  Downloading memory_profiler-0.15.tar.gz (9.2 kB)
    ERROR: Command errored out with exit status 1:
     command: /usr/local/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-pcu33a88/memory-profiler_7b59e32856f8406ebb4bd4ae32c3ac30/setup.py'"'"'; __file__='"'"'/tmp/pip-install-pcu33a88/memory-profiler_7b59e32856f8406ebb4bd4ae32c3ac30/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-stqaw76t
         cwd: /tmp/pip-install-pcu33a88/memory-profiler_7b59e32856f8406ebb4bd4ae32c3ac30/
    Complete output (8 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-install-pcu33a88/memory-profiler_7b59e32856f8406ebb4bd4ae32c3ac30/setup.py", line 1, in <module>
        import memory_profiler
      File "/tmp/pip-install-pcu33a88/memory-profiler_7b59e32856f8406ebb4bd4ae32c3ac30/memory_profiler.py", line 358
        except Exception, e:
                        ^
    SyntaxError: invalid syntax
    ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/bd/91/03006c69b17bf6e7c4150ada5cd548b544a289fd0803d4976b15e3101c4e/memory_profiler-0.15.tar.gz#sha256=228eb665a26ca214be356af05b452c5a6f90234c615e8b1d59cb29297f2f9392 (from https://pypi.org/simple/memory-profiler/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
  Downloading memory_profiler-0.14.tar.gz (5.7 kB)
  Downloading memory_profiler-0.13.tar.gz (5.8 kB)
  Downloading memory_profiler-0.12.tar.gz (5.7 kB)
  Downloading memory_profiler-0.11.tar.gz (5.6 kB)
  Downloading memory_profiler-0.10.tar.gz (5.3 kB)
    ERROR: Command errored out with exit status 1:
     command: /usr/local/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-pcu33a88/memory-profiler_05b053b6dc244bc5b5258cd7d292bc99/setup.py'"'"'; __file__='"'"'/tmp/pip-install-pcu33a88/memory-profiler_05b053b6dc244bc5b5258cd7d292bc99/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-eybvkf0c
         cwd: /tmp/pip-install-pcu33a88/memory-profiler_05b053b6dc244bc5b5258cd7d292bc99/
    Complete output (5 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-install-pcu33a88/memory-profiler_05b053b6dc244bc5b5258cd7d292bc99/setup.py", line 20, in <module>
        long_description=open('README.rst').read(),
    FileNotFoundError: [Errno 2] No such file or directory: 'README.rst'
    ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/e8/f2/4440d3e4751f12160a80d7230073d68ce29058c1708c232437f8d908741b/memory_profiler-0.10.tar.gz#sha256=384d69febdd754d422bc36f821d4458223ec3aae8f761003e875b7a2e250ca9b (from https://pypi.org/simple/memory-profiler/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
  Downloading memory_profiler-0.9.tar.gz (4.8 kB)
  Downloading memory_profiler-0.8.tar.gz (4.5 kB)
  Downloading memory_profiler-0.7.tar.gz (4.3 kB)
  Downloading memory_profiler-0.5.tar.gz (4.5 kB)
  Downloading memory_profiler-0.4.tar.gz (4.2 kB)
    ERROR: Command errored out with exit status 1:
     command: /usr/local/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-pcu33a88/memory-profiler_ab2fdffb0aa94b3298865a7255e57ed4/setup.py'"'"'; __file__='"'"'/tmp/pip-install-pcu33a88/memory-profiler_ab2fdffb0aa94b3298865a7255e57ed4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-1vly_dje
         cwd: /tmp/pip-install-pcu33a88/memory-profiler_ab2fdffb0aa94b3298865a7255e57ed4/
    Complete output (5 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-install-pcu33a88/memory-profiler_ab2fdffb0aa94b3298865a7255e57ed4/setup.py", line 20, in <module>
        long_description=open('README.rst').read(),
    FileNotFoundError: [Errno 2] No such file or directory: 'README.rst'
    ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/35/8d/9e3608dd7e5a2fff564d2346b801f29c3746e42ffd0021993fe945600fd4/memory_profiler-0.4.tar.gz#sha256=be8ca587072c5fe991edaedb6e04dacccc0d6f64d0d428726f86451a099bcd14 (from https://pypi.org/simple/memory-profiler/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
  Downloading memory_profiler-0.3.tar.gz (4.2 kB)
    ERROR: Command errored out with exit status 1:
     command: /usr/local/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-pcu33a88/memory-profiler_20560f70512042628896a22280f3833a/setup.py'"'"'; __file__='"'"'/tmp/pip-install-pcu33a88/memory-profiler_20560f70512042628896a22280f3833a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-hgrkt_49
         cwd: /tmp/pip-install-pcu33a88/memory-profiler_20560f70512042628896a22280f3833a/
    Complete output (5 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-install-pcu33a88/memory-profiler_20560f70512042628896a22280f3833a/setup.py", line 20, in <module>
        long_description=open('README.rst').read(),
    FileNotFoundError: [Errno 2] No such file or directory: 'README.rst'
    ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/f9/80/f6e8872f9e99190d5f55d48baf1cc61146576a6ef00733f6bbbf74e9659c/memory_profiler-0.3.tar.gz#sha256=2db01e9c77e4995ba5d8cbaed6edc96deba538509b0455f8d1700e60b9f4a873 (from https://pypi.org/simple/memory-profiler/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
  Downloading memory_profiler-0.2.tar.gz (4.2 kB)
    ERROR: Command errored out with exit status 1:
     command: /usr/local/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-pcu33a88/memory-profiler_f2c477e947634b64a29c655c6da4cd50/setup.py'"'"'; __file__='"'"'/tmp/pip-install-pcu33a88/memory-profiler_f2c477e947634b64a29c655c6da4cd50/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-xblmctct
         cwd: /tmp/pip-install-pcu33a88/memory-profiler_f2c477e947634b64a29c655c6da4cd50/
    Complete output (5 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-install-pcu33a88/memory-profiler_f2c477e947634b64a29c655c6da4cd50/setup.py", line 20, in <module>
        long_description=open('README.rst').read(),
    FileNotFoundError: [Errno 2] No such file or directory: 'README.rst'
    ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/b2/4b/f783b2ed16c5574976a6cd7f07738a58d4fb45f77ff2dbb11ffc17fdb7bb/memory_profiler-0.2.tar.gz#sha256=bef4419cc18d278fca8aabb7714463def9963390de89ba215cacab429c582fd0 (from https://pypi.org/simple/memory-profiler/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
  Downloading memory_profiler-0.1.tar.gz (3.5 kB)
    ERROR: Command errored out with exit status 1:
     command: /usr/local/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-pcu33a88/memory-profiler_2a6641ee1ae848179fa60ad3d1232944/setup.py'"'"'; __file__='"'"'/tmp/pip-install-pcu33a88/memory-profiler_2a6641ee1ae848179fa60ad3d1232944/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-pkhaflfm
         cwd: /tmp/pip-install-pcu33a88/memory-profiler_2a6641ee1ae848179fa60ad3d1232944/
    Complete output (8 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-install-pcu33a88/memory-profiler_2a6641ee1ae848179fa60ad3d1232944/setup.py", line 1, in <module>
        import memory_profiler
      File "/tmp/pip-install-pcu33a88/memory-profiler_2a6641ee1ae848179fa60ad3d1232944/memory_profiler.py", line 215
        print "%5.1f MB %s" % (mem, (' ' * 10) + line.rstrip())
              ^
    SyntaxError: invalid syntax
    ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/6b/5c/4a21d2fe9b5c32f575a9daa93ff4e2e36ffe0ff0aeb7eadfb9fe5958b9f2/memory_profiler-0.1.tar.gz#sha256=e2dca3099f1b86358b6bd7a355c6f7c73e386cf66e7d3557b823f6f0b0208147 (from https://pypi.org/simple/memory-profiler/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
INFO: pip is looking at multiple versions of sphinxcontrib-bibtex to determine which version is compatible with other requirements. This could take a while.
Collecting sphinxcontrib-bibtex>=2.1.2
  Using cached sphinxcontrib_bibtex-2.3.0-py3-none-any.whl (35 kB)
  Downloading sphinxcontrib_bibtex-2.2.1-py3-none-any.whl (31 kB)
  Downloading sphinxcontrib_bibtex-2.2.0-py3-none-any.whl (31 kB)
  Downloading sphinxcontrib_bibtex-2.1.4-py3-none-any.whl (17 kB)
  Downloading sphinxcontrib_bibtex-2.1.3-py3-none-any.whl (17 kB)
  Downloading sphinxcontrib_bibtex-2.1.2-py3-none-any.whl (18 kB)
INFO: pip is looking at multiple versions of sphinx-gallery to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of pydata-sphinx-theme to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of sphinx to determine which version is compatible with other requirements. This could take a while.
Collecting sphinx!=4.1.0
  Using cached Sphinx-4.1.2-py3-none-any.whl (2.9 MB)
INFO: pip is looking at multiple versions of sphinxcontrib-bibtex to determine which version is compatible with other requirements. This could take a while.
INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. If you want to abort this run, you can press Ctrl + C to do so. To improve how pip performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking
  Downloading Sphinx-4.1.1-py3-none-any.whl (2.9 MB)
  Downloading Sphinx-4.0.3-py3-none-any.whl (2.9 MB)
  Downloading Sphinx-4.0.2-py3-none-any.whl (2.9 MB)
  Downloading Sphinx-4.0.1-py3-none-any.whl (2.9 MB)
Collecting Jinja2>=2.3
  Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB)
Collecting MarkupSafe<2.0
  Downloading MarkupSafe-1.1.1-cp38-cp38-manylinux2010_x86_64.whl (32 kB)
Collecting sphinx!=4.1.0
  Downloading Sphinx-4.0.0-py3-none-any.whl (2.8 MB)
  Downloading Sphinx-3.5.4-py3-none-any.whl (2.8 MB)
INFO: pip is looking at multiple versions of sphinx-gallery to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of pydata-sphinx-theme to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of sphinx to determine which version is compatible with other requirements. This could take a while.
  Downloading Sphinx-3.5.3-py3-none-any.whl (2.8 MB)
  Downloading Sphinx-3.5.2-py3-none-any.whl (2.8 MB)
  Downloading Sphinx-3.5.1-py3-none-any.whl (2.8 MB)
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Too long with no output (exceeded 10m0s): context deadline exceeded

@drammock
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drammock commented Aug 16, 2021

not certain, but seems to be triggered by neo -> quantities. Maybe installing quantities from GitHub isn't satisfying neo's requested version (quantities uses some complicated magic called versioneer, so I'm not certain what version the github install will show up as, or how it will behave with pip's version comparison machinery)

@larsoner
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larsoner commented Aug 16, 2021

I would try pinning memory profiler to 0.58.0 to simplify its output, too

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larsoner commented Aug 16, 2021

Maybe same with neo to 0.10.0. Or maybe even back to 0.9 if 0.10 is causing problems

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drammock commented Aug 16, 2021

hypothesis confirmed:

ERROR: Cannot install -r requirements_doc.txt (line 9), neo==0.10.0 and quantities 0+unknown (from https://github.com/drammock/python-quantities/archive/fix-backslash-escape.zip) because these package versions have conflicting dependencies.

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drammock commented Aug 16, 2021

this fix isn't going to work. The invalid backslash has been in quantities for over ten years, and neo's first tagged release was only 9 years ago. Choices seem to be

  1. ignore "invalid backslash escape" syntax errors somehow, or
  2. wait for quantities to merge my PR + cut a release

@drammock drammock closed this Aug 16, 2021
@adam2392 adam2392 mentioned this pull request Aug 16, 2021
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@drammock drammock mentioned this pull request Aug 16, 2021
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