Some additions to the dipole orientation tutorial.#12960
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larsoner merged 2 commits intomne-tools:mainfrom Nov 12, 2024
Merged
Some additions to the dipole orientation tutorial.#12960larsoner merged 2 commits intomne-tools:mainfrom
larsoner merged 2 commits intomne-tools:mainfrom
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larsoner
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Nov 12, 2024
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| .. warning:: | ||
| A common "gotcha!" is that by default, dipole orientation information is discarded | ||
| in the source estimate. Only the magnitude of the activity is retained. This means |
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I think this is true when using loose != 0. For fixed ori I think it stays signed even with pick_ori=None (the default). But given that loose="auto" defaults to 0.2 even for surfaces I think it's okay to delve into these details elsewhere. Thanks @wmvanvliet !
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You are correct :)
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Based on a discussion on the forum, it may be a good idea to mention these common gotchas/pitfalls when doing analyses in source space. Because we pool activity across dipoles by default, source activity is always positive. Hence, don't expect sine waves to remain sine waves, don't expect averaging across multiple epochs to produce a nice evoked response (noise cancelling out).
Also, some of the figures needed some fixes to render properly.