Description of the problem
Hi guys,
After MNE upgraded from V1.5.1 to 1.7.1, I found the parameter ‘rank’ in decoding.CSP() no longer supports string value. Meanwhile, the API reference of CSP keeps same as before. api
Please update the API reference, so we can learn what’s new, thanks.
The original question in forum is forum
Here, I use random data to reproduce the issue.
Steps to reproduce
import numpy as np
from mne.decoding import CSP
# Assume data X is a 4D array with shape (n_trials, n_chs, n_times)
# labels y is a 1D array with shape ( n_trials,)
X = np.random.rand(20, 64, 128) # Example data
y = np.random.randint(0, 3, 20) # Example labels
# error case
csp = CSP(n_components=3, reg='empirical', log=True,
cov_est='concat', transform_into='average_power',
norm_trace=False, rank='full', component_order='mutual_info')
csp.fit(X, y)
# #no error case
# csp = CSP(n_components=3, reg='empirical', log=True,
# cov_est='concat', transform_into='average_power',
# norm_trace=False, rank=None, component_order='mutual_info')
# csp.fit(X, y)
Link to data
No response
Expected results
No error
Actual results
Traceback (most recent call last):
Cell In[4], line 10
csp.fit(X, y)
File E:\conda_env\mne\Lib\site-packages\mne\decoding\csp.py:196 in fit
_validate_type(self.rank, (dict, None), "rank")
File E:\conda_env\mne\Lib\site-packages\mne\utils\check.py:613 in _validate_type
raise TypeError(
TypeError: rank must be an instance of dict or None, got <class 'str'> instead.
Additional information
Platform Windows-10-10.0.19045-SP0
Python 3.11.6 | packaged by conda-forge | (main, Oct 3 2023, 10:29:11) [MSC v.1935 64 bit (AMD64)]
Executable E:\conda_env\mne\pythonw.exe
CPU Intel64 Family 6 Model 158 Stepping 10, GenuineIntel (12 cores)
Memory 31.8 GB
Core
├☑ mne 1.7.1 (latest release)
├☑ numpy 1.25.2 (MKL 2023.1-Product with 6 threads)
├☑ scipy 1.11.3
└☑ matplotlib 3.7.3 (backend=Qt5Agg)
Numerical (optional)
├☑ sklearn 1.2.2
├☑ numba 0.58.0
├☑ nibabel 5.1.0
├☑ nilearn 0.10.2
├☑ dipy 1.7.0
├☑ openmeeg 2.5.7
├☑ cupy 12.2.0
├☑ pandas 2.2.1
├☑ h5io 0.1.9
└☑ h5py 3.10.0
Visualization (optional)
├☑ pyvista 0.42.2 (OpenGL 4.5.0 - Build 27.20.100.9365 via Intel(R) UHD Graphics 630)
├☑ pyvistaqt 0.0.0
├☑ vtk 9.2.6
├☑ qtpy 2.2.0 (PyQt5=5.15.8)
├☑ pyqtgraph 0.13.1
├☑ mne-qt-browser 0.6.1
├☑ ipywidgets 8.0.4
├☑ trame_client 2.12.1
├☑ trame_server 2.12.0
├☑ trame_vtk 2.5.8
├☑ trame_vuetify 2.3.1
└☐ unavailable ipympl
Ecosystem (optional)
├☑ mne-icalabel 0.5.1
├☑ eeglabio 0.0.2-4
├☑ edfio 0.4.3
├☑ mffpy 0.8.0
├☑ pybv 0.7.5
└☐ unavailable mne-bids, mne-nirs, mne-features, mne-connectivity, mne-bids-pipeline, neo
Description of the problem
Hi guys,
After MNE upgraded from V1.5.1 to 1.7.1, I found the parameter ‘rank’ in decoding.CSP() no longer supports string value. Meanwhile, the API reference of CSP keeps same as before. api
Please update the API reference, so we can learn what’s new, thanks.
The original question in forum is forum
Here, I use random data to reproduce the issue.
Steps to reproduce
Link to data
No response
Expected results
No error
Actual results
Traceback (most recent call last):
Cell In[4], line 10
csp.fit(X, y)
File E:\conda_env\mne\Lib\site-packages\mne\decoding\csp.py:196 in fit
_validate_type(self.rank, (dict, None), "rank")
File E:\conda_env\mne\Lib\site-packages\mne\utils\check.py:613 in _validate_type
raise TypeError(
TypeError: rank must be an instance of dict or None, got <class 'str'> instead.
Additional information
Platform Windows-10-10.0.19045-SP0
Python 3.11.6 | packaged by conda-forge | (main, Oct 3 2023, 10:29:11) [MSC v.1935 64 bit (AMD64)]
Executable E:\conda_env\mne\pythonw.exe
CPU Intel64 Family 6 Model 158 Stepping 10, GenuineIntel (12 cores)
Memory 31.8 GB
Core
├☑ mne 1.7.1 (latest release)
├☑ numpy 1.25.2 (MKL 2023.1-Product with 6 threads)
├☑ scipy 1.11.3
└☑ matplotlib 3.7.3 (backend=Qt5Agg)
Numerical (optional)
├☑ sklearn 1.2.2
├☑ numba 0.58.0
├☑ nibabel 5.1.0
├☑ nilearn 0.10.2
├☑ dipy 1.7.0
├☑ openmeeg 2.5.7
├☑ cupy 12.2.0
├☑ pandas 2.2.1
├☑ h5io 0.1.9
└☑ h5py 3.10.0
Visualization (optional)
├☑ pyvista 0.42.2 (OpenGL 4.5.0 - Build 27.20.100.9365 via Intel(R) UHD Graphics 630)
├☑ pyvistaqt 0.0.0
├☑ vtk 9.2.6
├☑ qtpy 2.2.0 (PyQt5=5.15.8)
├☑ pyqtgraph 0.13.1
├☑ mne-qt-browser 0.6.1
├☑ ipywidgets 8.0.4
├☑ trame_client 2.12.1
├☑ trame_server 2.12.0
├☑ trame_vtk 2.5.8
├☑ trame_vuetify 2.3.1
└☐ unavailable ipympl
Ecosystem (optional)
├☑ mne-icalabel 0.5.1
├☑ eeglabio 0.0.2-4
├☑ edfio 0.4.3
├☑ mffpy 0.8.0
├☑ pybv 0.7.5
└☐ unavailable mne-bids, mne-nirs, mne-features, mne-connectivity, mne-bids-pipeline, neo