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Relax Polars version pin to allow >=1.30

Status: Open.

#350 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Apr 6, 2026

This isn't right; the output will depend upon the passed probs to the quantile call...

Status: Open.

#342 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Sep 24, 2025

Stage testing set-up should be more flexible for arbitrary input/output settings.

Pipeline Configuration and Stage ManagementIssues relating to proper definition and usability of different stages in a pipelineIssues relating to proper definition and usability of different stages in a pipeline

priority:highA high priority issue.A high priority issue.

Testing

Usability / Interface

Status: Open.

#332 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Jun 2, 2025

The runner should delete intermediate directories when those stages are done.

Computational PerformanceIssues relating to efficient computational performance of MEDS_transforms pipelinesIssues relating to efficient computational performance of MEDS_transforms pipelines

priority:mediumA medium priority issue.A medium priority issue.

RunnerFor things about the multi-stage, single-script RunnerFor things about the multi-stage, single-script Runner

Status: Open.

#331 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Jun 2, 2025

Stages should all export flexible_schema objects describing their output.

Code CleanlinessFor code style, cleanliness, reduction of technical debt, etc.For code style, cleanliness, reduction of technical debt, etc.

Pipeline Configuration and Stage ManagementIssues relating to proper definition and usability of different stages in a pipelineIssues relating to proper definition and usability of different stages in a pipeline

Testing

Status: Open.

#324 In mmcdermott/MEDS_transforms;

· mmcdermott opened on May 6, 2025

reshard_to_split doesn't work naturally in single-stage mode.

bugSomething isn't workingSomething isn't working

priority:mediumA medium priority issue.A medium priority issue.

Status: Open.

#321 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Apr 29, 2025

help strings should include pipeline config args

documentationImprovements or additions to documentationImprovements or additions to documentation

priority:mediumA medium priority issue.A medium priority issue.

Usability / Interface

Status: Open.

#320 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Apr 29, 2025

Should produce nice documentation about each stage leveraging programmatic configs, examples, READMEs, etc.

documentationImprovements or additions to documentationImprovements or additions to documentation

priority:highA high priority issue.A high priority issue.

Usability / Interface

Status: Open.

#317 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Apr 17, 2025

Quantile aggregation should permit different number of quantiles being computed for different codes.

bugSomething isn't workingSomething isn't working

Code aggregationsIssues about building new aggregations over codes and values.Issues about building new aggregations over codes and values.

priority:mediumA medium priority issue.A medium priority issue.

Status: Open.

#314 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Apr 16, 2025

.editorconfig and .pre-commit-config.yaml have duplicative information

Code CleanlinessFor code style, cleanliness, reduction of technical debt, etc.For code style, cleanliness, reduction of technical debt, etc.

priority:lowA low priority issue.A low priority issue.

Status: Open.

#307 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Apr 7, 2025

MEDS transforms should have a stage dedicated to computing splits for existing MEDS datasets

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

MEDS-TransformIssues for the data pre-processing transformations in MEDS_transformsIssues for the data pre-processing transformations in MEDS_transforms

New TransformationRequests for a new transformation function that can be used in MEDS pipelinesRequests for a new transformation function that can be used in MEDS pipelines

priority:mediumA medium priority issue.A medium priority issue.

Status: Open.

#250 In mmcdermott/MEDS_transforms;

· rvandewater opened on Feb 13, 2025

Should consider integration with other workflow management softwares

Pipeline Configuration and Stage ManagementIssues relating to proper definition and usability of different stages in a pipelineIssues relating to proper definition and usability of different stages in a pipeline

priority:highA high priority issue.A high priority issue.

RunnerFor things about the multi-stage, single-script RunnerFor things about the multi-stage, single-script Runner

Status: Open.

#234 In mmcdermott/MEDS_transforms;

· mmcdermott opened on Jan 15, 2025