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Use https://packagemanager.rstudio.com to install R packages faster#5220

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harupy merged 4 commits into
mlflow:masterfrom
harupy:use-packagemanager-rstudio
Jan 6, 2022
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Use https://packagemanager.rstudio.com to install R packages faster#5220
harupy merged 4 commits into
mlflow:masterfrom
harupy:use-packagemanager-rstudio

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@harupy

@harupy harupy commented Jan 5, 2022

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What changes are proposed in this pull request?

Use https://packagemanager.rstudio.com to install R packages faster.

Before: 15 ~ 20 minutes
After: 1.5 minutes.

How is this patch tested?

Ensure the existing checks all pass.

Does this PR change the documentation?

  • No. You can skip the rest of this section.
  • Yes. Make sure the changed pages / sections render correctly by following the steps below.
  1. Check the status of the ci/circleci: build_doc check. If it's successful, proceed to the
    next step, otherwise fix it.
  2. Click Details on the right to open the job page of CircleCI.
  3. Click the Artifacts tab.
  4. Click docs/build/html/index.html.
  5. Find the changed pages / sections and make sure they render correctly.

Release Notes

Is this a user-facing change?

  • No. You can skip the rest of this section.
  • Yes. Give a description of this change to be included in the release notes for MLflow users.

(Details in 1-2 sentences. You can just refer to another PR with a description if this PR is part of a larger change.)

What component(s), interfaces, languages, and integrations does this PR affect?

Components

  • area/artifacts: Artifact stores and artifact logging
  • area/build: Build and test infrastructure for MLflow
  • area/docs: MLflow documentation pages
  • area/examples: Example code
  • area/model-registry: Model Registry service, APIs, and the fluent client calls for Model Registry
  • area/models: MLmodel format, model serialization/deserialization, flavors
  • area/projects: MLproject format, project running backends
  • area/scoring: MLflow Model server, model deployment tools, Spark UDFs
  • area/server-infra: MLflow Tracking server backend
  • area/tracking: Tracking Service, tracking client APIs, autologging

Interface

  • area/uiux: Front-end, user experience, plotting, JavaScript, JavaScript dev server
  • area/docker: Docker use across MLflow's components, such as MLflow Projects and MLflow Models
  • area/sqlalchemy: Use of SQLAlchemy in the Tracking Service or Model Registry
  • area/windows: Windows support

Language

  • language/r: R APIs and clients
  • language/java: Java APIs and clients
  • language/new: Proposals for new client languages

Integrations

  • integrations/azure: Azure and Azure ML integrations
  • integrations/sagemaker: SageMaker integrations
  • integrations/databricks: Databricks integrations

How should the PR be classified in the release notes? Choose one:

  • rn/breaking-change - The PR will be mentioned in the "Breaking Changes" section
  • rn/none - No description will be included. The PR will be mentioned only by the PR number in the "Small Bugfixes and Documentation Updates" section
  • rn/feature - A new user-facing feature worth mentioning in the release notes
  • rn/bug-fix - A user-facing bug fix worth mentioning in the release notes
  • rn/documentation - A user-facing documentation change worth mentioning in the release notes

@github-actions github-actions Bot added the rn/none List under Small Changes in Changelogs. label Jan 5, 2022
@harupy harupy changed the title Use https://packagemanager.rstudio.com to install R packages faster Use https://packagemanager.rstudio.com to install R packages faster Jan 5, 2022
@harupy harupy force-pushed the use-packagemanager-rstudio branch from 4b7afdb to 97f56d2 Compare January 5, 2022 15:14
Signed-off-by: harupy <hkawamura0130@gmail.com>
@harupy harupy force-pushed the use-packagemanager-rstudio branch from 97f56d2 to 4442c92 Compare January 5, 2022 15:14
Signed-off-by: harupy <hkawamura0130@gmail.com>
Comment thread mlflow/R/mlflow/.Rprofile Outdated
Comment on lines +1 to +3
# https://packagemanager.rstudio.com provides pre-compiled binary packages for Linux
# that can be installed significantly faster.
options(repos = c(REPO_NAME = "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"))

@harupy harupy Jan 5, 2022

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The package installation (which usually takes 15~20 min) took 1.5 min with https://packagemanager.rstudio.com:

https://github.com/mlflow/mlflow/runs/4716557367?check_suite_focus=true#step:11:1

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Good finding!

Comment on lines +98 to +101
working-directory: mlflow/R/mlflow
run: |
install.packages("devtools")
remotes::install_deps('mlflow/R/mlflow', dependencies = TRUE, upgrade = FALSE)
remotes::install_deps('.', dependencies = TRUE, upgrade = FALSE)

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Run remotes::install_deps in mlflow/R/mlflow to allow R to find .Rprofile.

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where is .Rprofile file ?

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oh, in user home directory

harupy added 2 commits January 6, 2022 18:42
Signed-off-by: harupy <hkawamura0130@gmail.com>
Signed-off-by: harupy <hkawamura0130@gmail.com>

@WeichenXu123 WeichenXu123 left a comment

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LGTM

@harupy harupy merged commit d83d69d into mlflow:master Jan 6, 2022
@harupy harupy deleted the use-packagemanager-rstudio branch January 6, 2022 10:23
@lorenzwalthert

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nice 🥳

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3 participants