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Make example input and PyFuncInput support csc csr matrix#5016

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WeichenXu123 merged 16 commits into
mlflow:masterfrom
WeichenXu123:make_example_input_support_csc_csr
Dec 7, 2021
Merged

Make example input and PyFuncInput support csc csr matrix#5016
WeichenXu123 merged 16 commits into
mlflow:masterfrom
WeichenXu123:make_example_input_support_csc_csr

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@WeichenXu123 WeichenXu123 commented Nov 7, 2021

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What changes are proposed in this pull request?

Make example input and PyFuncInput support csc csr matrix

How is this patch tested?

Unit tests.

Release Notes

Is this a user-facing change?

  • No. You can skip the rest of this section.
  • Yes. Give a description of this change to be included in the release notes for MLflow users.

(Details in 1-2 sentences. You can just refer to another PR with a description if this PR is part of a larger change.)

What component(s), interfaces, languages, and integrations does this PR affect?

Components

  • area/artifacts: Artifact stores and artifact logging
  • area/build: Build and test infrastructure for MLflow
  • area/docs: MLflow documentation pages
  • area/examples: Example code
  • area/model-registry: Model Registry service, APIs, and the fluent client calls for Model Registry
  • area/models: MLmodel format, model serialization/deserialization, flavors
  • area/projects: MLproject format, project running backends
  • area/scoring: MLflow Model server, model deployment tools, Spark UDFs
  • area/server-infra: MLflow Tracking server backend
  • area/tracking: Tracking Service, tracking client APIs, autologging

Interface

  • area/uiux: Front-end, user experience, plotting, JavaScript, JavaScript dev server
  • area/docker: Docker use across MLflow's components, such as MLflow Projects and MLflow Models
  • area/sqlalchemy: Use of SQLAlchemy in the Tracking Service or Model Registry
  • area/windows: Windows support

Language

  • language/r: R APIs and clients
  • language/java: Java APIs and clients
  • language/new: Proposals for new client languages

Integrations

  • integrations/azure: Azure and Azure ML integrations
  • integrations/sagemaker: SageMaker integrations
  • integrations/databricks: Databricks integrations

How should the PR be classified in the release notes? Choose one:

  • rn/breaking-change - The PR will be mentioned in the "Breaking Changes" section
  • rn/none - No description will be included. The PR will be mentioned only by the PR number in the "Small Bugfixes and Documentation Updates" section
  • rn/feature - A new user-facing feature worth mentioning in the release notes
  • rn/bug-fix - A user-facing bug fix worth mentioning in the release notes
  • rn/documentation - A user-facing documentation change worth mentioning in the release notes

@github-actions github-actions Bot added area/artifacts Artifact stores and artifact logging rn/feature Mention under Features in Changelogs. labels Nov 7, 2021
Comment thread mlflow/models/utils.py
Comment thread tests/sklearn/test_sklearn_autolog.py
Comment thread mlflow/utils/autologging_utils/__init__.py Outdated
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
@WeichenXu123 WeichenXu123 force-pushed the make_example_input_support_csc_csr branch from 1284889 to 61c84dd Compare November 8, 2021 07:44
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Comment thread mlflow/models/utils.py Outdated
Comment thread mlflow/models/utils.py Outdated
Comment thread tests/models/test_model_input_examples.py Outdated
Comment thread tests/types/test_schema.py Outdated
Comment thread tests/types/test_schema.py Outdated
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
@WeichenXu123 WeichenXu123 force-pushed the make_example_input_support_csc_csr branch from d9724cb to a619df0 Compare November 8, 2021 11:23
Comment thread tests/types/test_schema.py
Comment thread tests/types/test_schema.py Outdated
Comment thread tests/models/test_model_input_examples.py Outdated
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>

@tomasatdatabricks tomasatdatabricks left a comment

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Looks good to me in general. One aspect I am not sure if I understand is - do we store the example as dense matrix? I think we should have a way to store it as sparse matrix and load it back as sparse matrix.

Comment thread mlflow/models/utils.py
else:
elif isinstance(input_tensor, np.ndarray):
return {"inputs": input_tensor.tolist()}
else:

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  1. can we do elif isinstance(input_tesnor,csr_matrix, csc_matrix)?
  2. does this mean we store sparse input as dense vector? or is this stored as array of indices and array of values?

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I update code to store sparse input as data/indices/indptr vectors.
I also split csc/csr saving code out of the ndarray saving code.

harupy
harupy previously approved these changes Nov 26, 2021
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
@WeichenXu123 WeichenXu123 changed the title Make example input support csc csr matrix Make example input and PyFuncInput support csc csr matrix Dec 6, 2021
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Comment thread mlflow/models/utils.py Outdated

@tomasatdatabricks tomasatdatabricks left a comment

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Thanks for the changes! The looks good in great.

I left a minor comment about the example type string for sparse matrices but it's only a suggestion. I am also ok with it as is.

Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
@WeichenXu123 WeichenXu123 merged commit 66820dd into mlflow:master Dec 7, 2021
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3 participants