Analysis scripts for coproID article.

The notebooks used to generate the figures are listed below.
Use the conda environment file to reproduce the runtime environment:
conda env create -f environment.yml

• Figure 1: Coprolites

  

• Figure 2: Pipeline overview

  

• Figure 3: Gut Host DNA content

  

• Figure 4: Host DNA source prediction

  

• Figure 5: Sourcepredict embedding and source prediction of modern samples

  • A: Embedding of training samples

  

  • B: Source prediction

  

• Figure 6: Sourcepredict prediction of archaelogical samples.

  

• Figure 7: coproid source prediction

  

• Figure 8: coproID source prediction elements

  • A: For humans

  

  • B: For canids

  

• Figure S1: Damage plot for Non UDG Libraries

  

• Figure S2: Damage plot for UDG-half Libraries

  

• Figure S3: Archaelogical sites distribution map