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marlinfiggins/README.md

Hi there 👋

I'm a (data) scientist, mathematician, and researcher interested in developing methods and models for understanding infectious disease transmission and pathogen evolution. Currently, I'm a post-doctoral research fellow in Trevor Bedford's group at the Fred Hutchinson Cancer Center (@blab)

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  1. blab/evofr blab/evofr Public

    Tools for evolutionary forecasting

    Jupyter Notebook 14 1

  2. EvoDiffusion EvoDiffusion Public

    Generative viral sequence models

    Jupyter Notebook 1

  3. nextstrain/forecasts-ncov nextstrain/forecasts-ncov Public

    SARS-CoV-2 variant growth rates and frequency forecasts

    Python 9 3

  4. blab/ncov-forecasting-fit blab/ncov-forecasting-fit Public

    Assessing frequency forecasts of SARS-CoV-2 fitness models

    Jupyter Notebook 6 2

  5. blab/rt-from-frequency-dynamics blab/rt-from-frequency-dynamics Public

    Inferring variant-specific reproduction numbers from case counts and sequencing data

    Wolfram Language 45 5

  6. blab/relative-fitness-mechanisms blab/relative-fitness-mechanisms Public

    Frequency dynamics predict viral fitness, antigenic relationships and epidemic growth

    Jupyter Notebook 3