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segmentation fault at ovStoreBuild after oea #956

@ersgupta

Description

@ersgupta

This is in continuation with #947 . I get an error, it looks like a memory related error. I have all the 266 oea files present and one are empty. Could you help me trace this error?

-- Found 266 overlap error adjustment output files.
----------------------------------------
-- Starting command on Fri Jun 15 05:56:18 2018 with 813.363 GB free disk space

    cd unitigging/3-overlapErrorAdjustment
    $apps/canu-1.7/Linux-amd64/bin/ovStoreBuild \
      -G ../canu.het.asm.gkpStore \
      -O ../canu.het.asm.ovlStore \
      -evalues \
      -L ./oea.files \
    > ./oea.apply.err 2>&1
sh: line 5: 39142 Aborted                 (core dumped) $apps/canu-1.7/Linux-amd64/bin/ovStoreBuild -G ../canu.het.asm.gkpStore -O ../canu.het.asm.ovlStore -evalues -L ./oea.files > ./oea.apply.err 2>&1
...
$ cat oea.apply.err 
terminate called after throwing an instance of 'std::bad_alloc'
  what():  std::bad_alloc

Failed with 'Aborted'; backtrace (libbacktrace):
AS_UTL/AS_UTL_stackTrace.C::97 in _Z17AS_UTL_catchCrashiP7siginfoPv()
(null)::0 in (null)()
(null)::0 in (null)()
(null)::0 in (null)()
../../gcc-4.8.2/libstdc++-v3/libsupc++/vterminate.cc::95 in _ZN9__gnu_cxx27__verbose_terminate_handlerEv()
../../gcc-4.8.2/libstdc++-v3/libsupc++/eh_terminate.cc::38 in _ZN10__cxxabiv111__terminateEPFvvE()
../../gcc-4.8.2/libstdc++-v3/libsupc++/eh_terminate.cc::48 in _ZSt9terminatev()
../../gcc-4.8.2/libstdc++-v3/libsupc++/eh_throw.cc::84 in __cxa_throw()
../../gcc-4.8.2/libstdc++-v3/libsupc++/new_op.cc::56 in _Znwm()
../../gcc-4.8.2/libstdc++-v3/libsupc++/new_opv.cc::32 in _Znam()
stores/ovStore.C::544 in _ZN7ovStore10addEvaluesERSt6vectorIPcSaIS1_EE()
stores/ovStoreBuild.C::71 in addEvalues()
stores/ovStoreBuild.C::466 in main()
(null)::0 in (null)()
(null)::0 in (null)()

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