I recently updated my nr and krona tools databases and when I used ktClassifyBLAST to classify my blast results I got a warning that hundreds of accession numbers were not found in my local database. I checked a few and they all seem to correspond to TPA proteins (third party annotations) coming from the same paper (A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Parks et al 2018) and have not been recently added to NCBI ... However, they are not found in the earlier version of my databases. I probably don't think it is related to krona tools itself, as the accession numbers are indeed not found in the all.accession2taxid.sorted file... Did NCBI only recently added these proteins to the nr database, but not to the prot.accesion2taxid.gz file? Anybody else experiencing the same issue?