Assertion failure when mapping barley genome #76
Description
This is courtesy of @LindaMilne via ComparativeGenomicsToolkit/cactus#800 and reproduces with the minigraph-0.19_x64-linux release binary:
wget https://ics.hutton.ac.uk/barleyrtd/data/barley_two_old_genomes.gfa.gz
wget https://ics.hutton.ac.uk/barleyrtd/data/morex_1H_old.fasta.gz
minigraph barley_two_old_genomes.gfa.gz morex_1H_old.fasta.gz -xasm -c -t 32 -o morex.gaf
minigraph [M::main::7.941*1.00] loaded the graph from "barley_two_old_genomes.gfa.gz" [M::mg_index::59.948*1.27] indexed the graph
[M::mg_opt_update::62.273*1.26] occ_max1=100; lc_max_occ=2
minigraph: galign.c:133: mg_gchain_cigar: Assertion `l == gc->qe - gc->qs && gc->p->aplen == gc->pe - gc->ps' failed.
Aborted