Change lerna run to only pass target dependencies to Nx when there are not target defaults already defined in nx.json

Description

Motivation and Context

Follow up / partial reversion of:
#3345

How Has This Been Tested?

This has been covered by e2e tests for the run command.

Types of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to change)
• Chore (change that has absolutely no effect on users)

Checklist:

• My code follows the code style of this project.
• My change requires a change to the documentation.
• I have updated the documentation accordingly.
• I have read the CONTRIBUTING document.
• I have added tests to cover my changes.
• All new and existing tests passed.