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1. DeepSomatic_manuscript DeepSomatic_manuscript Public

   Collection of scripts used for bam, vcf and bed manipulation described in the DeepSomatic manuscript.

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2. bam-base-quality-adj bam-base-quality-adj Public

   Script to adjust base qualities of bam files

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3. handlers handlers Public

   Scripts to read in files.

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4. Guppy Guppy Public

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5. WDLs WDLs Public

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6. DeepSomatic_postprocess DeepSomatic_postprocess Public

   Keep track of scripts used for DeepSomatic analysis

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