A tool developed for analyzing CG methylation from targeted long-read Tet-assisted pyridine borane sequencing (lrTAPS).

run_dataSummarize.sh

run_reference.sh

run_mapping.sh

run_callMeth.sh

$$methylation = \frac{mC}{mC+uC}$$

$$mC = CA + GT$$

$$uC = CG$$