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Write SAM or BAM format files.

Status: Open.

#141 In jdidion/atropos;

· brgew opened on Mar 28, 2025

--nextseq-trim parameter settings

Status: Open.

#140 In jdidion/atropos;

· matt-bakker opened on Feb 11, 2025

Atropos was stuck while waiting for a subprocess or worker thread to finish

Status: Open.

#139 In jdidion/atropos;

· dgpinheiro opened on Nov 21, 2024

Move CI to github actions

Status: Open.

#134 In jdidion/atropos;

· jdidion opened on Dec 21, 2022

Install Error

Status: Open.

#132 In jdidion/atropos;

· JChristopherEllis opened on Dec 21, 2022

defaults not listed in cli docs

Status: Open.

#130 In jdidion/atropos;

· nick-youngblut opened on Jan 16, 2022

detect: --max-reads default

Status: Open.

#129 In jdidion/atropos;

· nick-youngblut opened on Jan 16, 2022

Implement non-internal adapters

enhancement

Status: Open.

#119 In jdidion/atropos;

· jdidion opened on Aug 14, 2020

Add support for output to BAM

enhancement

Status: Open.

#95 In jdidion/atropos;

· plijnzaad opened on Apr 21, 2020

·  

2.0

Push latest version to DockerHub

chore

Status: Open.

#93 In jdidion/atropos;

· jdidion opened on Mar 9, 2020

Update sequencing_adapters.fa

chore

help wanted

Status: Open.

#92 In jdidion/atropos;

· amizeranschi opened on Feb 10, 2020

·  

2.0

Add option to overwrite reads with nextseq low quality

enhancement

Status: Open.

#82 In jdidion/atropos;

· jessrosenfield opened on Jun 28, 2019

·  

2.1