integrate advanced time func with UQ into the routine workflow#795
Merged
yunjunz merged 6 commits intoinsarlab:mainfrom Jun 17, 2022
Merged
integrate advanced time func with UQ into the routine workflow#795yunjunz merged 6 commits intoinsarlab:mainfrom
yunjunz merged 6 commits intoinsarlab:mainfrom
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+ add the following two new template options into smallbaselineApp.cfg - mintpy.velocity.uncertaintyQuantification = residue / covariance / bootstrap, to replace the previous mintpy.velocity.bootstrap option - mintpy.velocity.timeSeriesCovFile with the default value of no + timeseries2velocity: re-use arg_group.add_reference_argument(plot=False) in timeseries2velocity.py + load_data: write S1A/B_date.txt file from SAFE_files.txt file if the latter exists in its default location (same level as reference folder)
+ integrate the advanced time func fitting into smallbaselineApp.py, via the following template options:
- mintpy.timeFunc.polynomial
- mintpy.timeFunc.periodic
- mintpy.timeFunc.step
- mintpy.timeFunc.exp
- mintpy.timeFunc.log
+ rename the following options for consistency **[BREAKING CHANGES]**:
- mintpy.velocity.excludeDate --> mintpy.timeFunc.excludeDate
- mintpy.velocity.startDate --> mintpy.timeFunc.startDate
- mintpy.velocity.endDate --> mintpy.timeFunc.endDate
- mintpy.velocity.uncertaintyQuantifiction --> mintpy.timeFunc.uncertaintyQuantification
- mintpy.velocity.timeSeriesCovFile --> mintpy.timeFunc.timeSeriesCovFile
- mintpy.velocity.bootstrapCount --> mintpy.timeFunc.bootstrapCount
+ utils.time_func.py:
- add MODEL_EXAMPLE as the single-sourced example for the time function model/configuration setup
- add inps2model() to parse/convert the namespace "inps" object into time function dict "model" object
- add get_num_param() to estimate the num of unknown parameters from a given model dict object
+ utils.readfile.read_template(): add "skip_chars" argument to skip certain characters in the template values, e.g. the commonly template typo from users "[" and "]". This is to simplify the read_template2inps() functions.
- leverage the new read_template() in following scripts:
- dem_error.py
- geocode.py
- modify_network.py
- reference_point.py
- timeseries2velocity.py
- the insarmaps-related code is removed, and they are messy and they can and should be implemented separately in insarmaps repo if needed.
+ utils.ptime.py: add get_exclude_date_list() from previous ts2vel.py
+ utils.arg_group.py:
- add_time_func_argument(): fix typo and better alignment for comments to improve the readability
- adjust indentation throughout the script
+ timeseries2velocity: support time function inputs from template files
- add time function inputs into the config keys to be saved in the h5 file
- remove the comments on contributing authors, as they are visible in the git commit history
- merge init_exp_log_dicts() and read_inps2model() into utils.time_func.inps2model()
- refactor and move read_exclude_date() into utils.ptime.get_exclude_date_list()
- read_template2inps(): support the new time function template options
- model2hdf5_dataset(): modify the periodic/exp/log dataset names, to be more clear on the time unit
+ move ifgram_reconstrunction.py to /legacy since it's not frequently used at all
+ move tropo_pyaps.py to /legacy since it's unavailable anymore (due to the takedown of EarthDef and Python2) and not actively used.
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@yuankailiu Could you please take a look at the changes, especially the ones related to the following, and let me know if you have any suggestions?
FYI, I have the ionosphere loading with on-the-fly resizing ready for another PR once this is merged. Cheers! |
yuankailiu
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Jun 17, 2022
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yuankailiu
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Hi @yunjunz, thank you for making these changes!
I have finished my review on the template file and the timeseries2velocity.py, and the time_func.py. I don't have other suggestions other than the comments I made inline. All look good to me right now.
yuankailiu
approved these changes
Jun 17, 2022
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Description of proposed changes
integrate the advanced time function fitting into
smallbaselineApp.pyvia new template options:mintpy.timeFunc.polynomialmintpy.timeFunc.periodicmintpy.timeFunc.stepmintpy.timeFunc.expmintpy.timeFunc.logintegrate the uncertainty quantification of time function parameters into
smallbaselineApp.pyvia new template options:mintpy.timeFunc.uncertaintyQuantification= residue / covariance / bootstrapmintpy.timeFunc.timeSeriesCovFile[BREAKING CHANGES] rename the previous
mintpy.velocity.*options tomintpy.timeFunc.*for consistency with the above changes.code refactoring on the following scripts to support these changes:
remove the following unused scripts to
legacydir:Reminders