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install: switch from mamba init to conda init#1393

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yunjunz merged 2 commits intoinsarlab:mainfrom
WFFWJH:patch-1
Nov 23, 2025
Merged

install: switch from mamba init to conda init#1393
yunjunz merged 2 commits intoinsarlab:mainfrom
WFFWJH:patch-1

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@WFFWJH WFFWJH commented Jul 14, 2025 •
edited by sourcery-ai bot
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when I execute "mamba init bash", I got error like this:

$ mamba init bash
The following arguments were not expected: bash init Run with --help for more information.

I read "mamba -h", so I change "mamba init bash" to "mamba shell init" follow the result.

Summary by Sourcery

Documentation:

  • Replace outdated 'mamba init bash' command with 'mamba shell init' in installation guide.

@WFFWJH
Update mamba init
9f3c17b 
$ mamba init bash
The following arguments were not expected: bash init
Run with --help for more information.
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sourcery-ai bot commented Jul 14, 2025 •
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Reviewer's Guide

Updated the installation guide to reflect the correct Mamba initialization command.

File-Level Changes

Change Details Files
Improve Mamba init invocation in docs
  • Replaced deprecated mamba init bash invocation with mamba shell init
 docs/installation.md
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@yunjunz
Revise installation instructions for clarity
dcc2743 
Updated installation instructions to recommend mamba and corrected conda initialization command.
@yunjunz yunjunz changed the title Update mamba init install: switch from mamba init to conda init Nov 23, 2025
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yunjunz commented Nov 23, 2025 •
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You are right @WFFWJH that mamba init bash is not working anymore. So thank you for the PR!

With the latest miniforge3, running mamba shell init works but also create an directory named mambaforge with etc folders within, even if we install the Miniforge3*.sh into the miniforge folder, which is annoying.

Testing the recommended initiation from the miniforge readme page as conda init bash works nicely for both conda and mamba. So I changed it to this syntax.

@yunjunz yunjunz merged commit 7fb8385 into insarlab:main Nov 23, 2025
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🎉 🎉 🎉 Congrats on merging your first pull request! We here at behaviorbot are proud of you! 🎉 🎉 🎉

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